Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.87■■□□□ 1.09
TPM1P09493 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.87■■□□□ 1.09
TPM1P09493 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 AC004408.2-201ENST00000623613 2777 ntBASIC21.87■■□□□ 1.09
TPM1P09493 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.86■■□□□ 1.09
TPM1P09493 AC097381.1-201ENST00000429019 1296 ntBASIC21.86■■□□□ 1.09
TPM1P09493 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
TPM1P09493 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TPM1P09493 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 AC005332.7-201ENST00000614046 2005 ntBASIC21.85■■□□□ 1.09
TPM1P09493 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.85■■□□□ 1.09
TPM1P09493 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.85■■□□□ 1.09
TPM1P09493 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.85■■□□□ 1.09
TPM1P09493 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.85■■□□□ 1.09
TPM1P09493 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.85■■□□□ 1.09
TPM1P09493 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.85■■□□□ 1.09
TPM1P09493 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.85■■□□□ 1.09
TPM1P09493 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
TPM1P09493 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
TPM1P09493 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
TPM1P09493 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TPM1P09493 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.84■■□□□ 1.09
TPM1P09493 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
TPM1P09493 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TPM1P09493 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.84■■□□□ 1.09
TPM1P09493 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TPM1P09493 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.84■■□□□ 1.09
TPM1P09493 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TPM1P09493 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.84■■□□□ 1.09
TPM1P09493 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.84■■□□□ 1.09
TPM1P09493 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TPM1P09493 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.84■■□□□ 1.09
TPM1P09493 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.84■■□□□ 1.09
TPM1P09493 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.84■■□□□ 1.09
TPM1P09493 SLC7A5P1-201ENST00000568957 537 ntBASIC21.84■■□□□ 1.09
TPM1P09493 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TPM1P09493 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TPM1P09493 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
TPM1P09493 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
TPM1P09493 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
TPM1P09493 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TPM1P09493 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.83■■□□□ 1.09
TPM1P09493 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.83■■□□□ 1.08
TPM1P09493 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.83■■□□□ 1.08
TPM1P09493 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
TPM1P09493 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.08
TPM1P09493 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
TPM1P09493 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TPM1P09493 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TPM1P09493 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TPM1P09493 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms