Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.14■□□□□ 0.65
LDLRP01130 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.14■□□□□ 0.65
LDLRP01130 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.14■□□□□ 0.65
LDLRP01130 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
LDLRP01130 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.13■□□□□ 0.65
LDLRP01130 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.13■□□□□ 0.65
LDLRP01130 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LDLRP01130 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.13■□□□□ 0.65
LDLRP01130 RARRES2P4-201ENST00000514074 484 ntBASIC19.13■□□□□ 0.65
LDLRP01130 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.13■□□□□ 0.65
LDLRP01130 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.13■□□□□ 0.65
LDLRP01130 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.13■□□□□ 0.65
LDLRP01130 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 MKRN4P-201ENST00000444706 1521 ntBASIC19.13■□□□□ 0.65
LDLRP01130 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.13■□□□□ 0.65
LDLRP01130 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.13■□□□□ 0.65
LDLRP01130 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LDLRP01130 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
LDLRP01130 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.12■□□□□ 0.65
LDLRP01130 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.12■□□□□ 0.65
LDLRP01130 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LDLRP01130 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.12■□□□□ 0.65
LDLRP01130 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.12■□□□□ 0.65
LDLRP01130 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.12■□□□□ 0.65
LDLRP01130 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LDLRP01130 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.12■□□□□ 0.65
LDLRP01130 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 AC125437.2-201ENST00000625180 2167 ntBASIC19.12■□□□□ 0.65
LDLRP01130 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LDLRP01130 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.11■□□□□ 0.65
LDLRP01130 AL158211.5-201ENST00000623583 2518 ntBASIC19.11■□□□□ 0.65
LDLRP01130 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.11■□□□□ 0.65
LDLRP01130 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.11■□□□□ 0.65
LDLRP01130 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.11■□□□□ 0.65
LDLRP01130 AC013268.1-206ENST00000638368 961 ntBASIC19.11■□□□□ 0.65
LDLRP01130 AC112229.1-201ENST00000639295 961 ntBASIC19.11■□□□□ 0.65
LDLRP01130 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LDLRP01130 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.11■□□□□ 0.65
LDLRP01130 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LDLRP01130 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.11■□□□□ 0.65
LDLRP01130 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LDLRP01130 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.1■□□□□ 0.65
LDLRP01130 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LDLRP01130 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LDLRP01130 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LDLRP01130 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.1■□□□□ 0.65
LDLRP01130 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LDLRP01130 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.1■□□□□ 0.65
LDLRP01130 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LDLRP01130 ESRRAP1-201ENST00000400596 1257 ntBASIC19.1■□□□□ 0.65
LDLRP01130 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LDLRP01130 RPS2P4-201ENST00000476944 856 ntBASIC19.1■□□□□ 0.65
LDLRP01130 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.1■□□□□ 0.65
LDLRP01130 KRT18P20-201ENST00000548986 1279 ntBASIC19.1■□□□□ 0.65
LDLRP01130 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.1■□□□□ 0.65
LDLRP01130 AC092118.2-201ENST00000613495 667 ntBASIC19.1■□□□□ 0.65
LDLRP01130 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.1■□□□□ 0.65
LDLRP01130 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms