Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.36■□□□□ 0.85
TOP3BO95985 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 AC233263.1-201ENST00000578059 224 ntBASIC20.36■□□□□ 0.85
TOP3BO95985 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TOP3BO95985 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.36■□□□□ 0.85
TOP3BO95985 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.36■□□□□ 0.85
TOP3BO95985 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
TOP3BO95985 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
TOP3BO95985 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.35■□□□□ 0.85
TOP3BO95985 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.35■□□□□ 0.85
TOP3BO95985 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.35■□□□□ 0.85
TOP3BO95985 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.35■□□□□ 0.85
TOP3BO95985 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.35■□□□□ 0.85
TOP3BO95985 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.35■□□□□ 0.85
TOP3BO95985 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.35■□□□□ 0.85
TOP3BO95985 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TOP3BO95985 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.34■□□□□ 0.85
TOP3BO95985 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.34■□□□□ 0.85
TOP3BO95985 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TOP3BO95985 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TOP3BO95985 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.34■□□□□ 0.85
TOP3BO95985 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
TOP3BO95985 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
TOP3BO95985 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TOP3BO95985 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TOP3BO95985 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TOP3BO95985 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TOP3BO95985 RNF165-205ENST00000588679 2904 ntBASIC20.33■□□□□ 0.85
TOP3BO95985 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TOP3BO95985 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TOP3BO95985 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.33■□□□□ 0.85
TOP3BO95985 LSM12P1-201ENST00000411836 588 ntBASIC20.33■□□□□ 0.85
TOP3BO95985 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
TOP3BO95985 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.33■□□□□ 0.85
TOP3BO95985 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.33■□□□□ 0.85
TOP3BO95985 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.33■□□□□ 0.85
TOP3BO95985 AL445228.2-201ENST00000605589 952 ntBASIC20.33■□□□□ 0.85
TOP3BO95985 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.33■□□□□ 0.84
TOP3BO95985 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.33■□□□□ 0.84
TOP3BO95985 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.33■□□□□ 0.84
TOP3BO95985 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
TOP3BO95985 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TOP3BO95985 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TOP3BO95985 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TOP3BO95985 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TOP3BO95985 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.32■□□□□ 0.84
TOP3BO95985 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TOP3BO95985 SMG8-203ENST00000578922 2178 ntBASIC20.32■□□□□ 0.84
TOP3BO95985 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
TOP3BO95985 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
TOP3BO95985 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 TCF3P1-201ENST00000423021 1937 ntBASIC20.32■□□□□ 0.84
TOP3BO95985 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.32■□□□□ 0.84
TOP3BO95985 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.32■□□□□ 0.84
TOP3BO95985 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
TOP3BO95985 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.32■□□□□ 0.84
TOP3BO95985 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.32■□□□□ 0.84
TOP3BO95985 RN7SL471P-201ENST00000580476 299 ntBASIC20.32■□□□□ 0.84
TOP3BO95985 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.32■□□□□ 0.84
TOP3BO95985 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 AC133561.5-201ENST00000635547 218 ntBASIC20.32■□□□□ 0.84
TOP3BO95985 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TOP3BO95985 AC092720.2-201ENST00000602388 1665 ntBASIC20.32■□□□□ 0.84
TOP3BO95985 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TOP3BO95985 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms