Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.96■□□□□ 0.95
RTN3O95197 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
RTN3O95197 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.96■□□□□ 0.95
RTN3O95197 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.96■□□□□ 0.95
RTN3O95197 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.96■□□□□ 0.95
RTN3O95197 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.96■□□□□ 0.95
RTN3O95197 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.96■□□□□ 0.95
RTN3O95197 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
RTN3O95197 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTN3O95197 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RTN3O95197 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
RTN3O95197 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 AC124283.5-201ENST00000624661 1809 ntBASIC20.95■□□□□ 0.94
RTN3O95197 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RTN3O95197 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RTN3O95197 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.95■□□□□ 0.94
RTN3O95197 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.95■□□□□ 0.94
RTN3O95197 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
RTN3O95197 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.95■□□□□ 0.94
RTN3O95197 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.95■□□□□ 0.94
RTN3O95197 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.95■□□□□ 0.94
RTN3O95197 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RTN3O95197 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.95■□□□□ 0.94
RTN3O95197 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.95■□□□□ 0.94
RTN3O95197 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
RTN3O95197 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTN3O95197 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
RTN3O95197 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.95■□□□□ 0.94
RTN3O95197 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.94■□□□□ 0.94
RTN3O95197 KRASP1-201ENST00000407852 552 ntBASIC20.94■□□□□ 0.94
RTN3O95197 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.94■□□□□ 0.94
RTN3O95197 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
RTN3O95197 AC110285.5-201ENST00000611501 352 ntBASIC20.94■□□□□ 0.94
RTN3O95197 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RTN3O95197 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.94■□□□□ 0.94
RTN3O95197 KRT16P6-202ENST00000425692 1426 ntBASIC20.94■□□□□ 0.94
RTN3O95197 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTN3O95197 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTN3O95197 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTN3O95197 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.93■□□□□ 0.94
RTN3O95197 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RTN3O95197 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
RTN3O95197 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RTN3O95197 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTN3O95197 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RTN3O95197 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RTN3O95197 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
RTN3O95197 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTN3O95197 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.92■□□□□ 0.94
RTN3O95197 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RTN3O95197 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.92■□□□□ 0.94
RTN3O95197 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
RTN3O95197 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
RTN3O95197 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.92■□□□□ 0.94
RTN3O95197 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RTN3O95197 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
RTN3O95197 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.92■□□□□ 0.94
RTN3O95197 AC008550.1-201ENST00000511500 884 ntBASIC20.92■□□□□ 0.94
RTN3O95197 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.92■□□□□ 0.94
RTN3O95197 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.92■□□□□ 0.94
RTN3O95197 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
RTN3O95197 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.92■□□□□ 0.94
RTN3O95197 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms