Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 CDV3P1-201ENST00000471403 739 ntBASIC19.47■□□□□ 0.71
VPS4BO75351 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.47■□□□□ 0.71
VPS4BO75351 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS4BO75351 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS4BO75351 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 AC125437.2-201ENST00000625180 2167 ntBASIC19.47■□□□□ 0.71
VPS4BO75351 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS4BO75351 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS4BO75351 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 BX323043.1-201ENST00000641006 1765 ntBASIC19.47■□□□□ 0.71
VPS4BO75351 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS4BO75351 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
VPS4BO75351 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
VPS4BO75351 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS4BO75351 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 RPS2P52-201ENST00000469610 820 ntBASIC19.46■□□□□ 0.71
VPS4BO75351 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS4BO75351 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS4BO75351 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS4BO75351 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4BO75351 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4BO75351 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4BO75351 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4BO75351 CNN2P6-201ENST00000439038 900 ntBASIC19.45■□□□□ 0.7
VPS4BO75351 AC010536.3-201ENST00000620306 533 ntBASIC19.45■□□□□ 0.7
VPS4BO75351 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4BO75351 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4BO75351 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4BO75351 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4BO75351 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4BO75351 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4BO75351 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4BO75351 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS4BO75351 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS4BO75351 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS4BO75351 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 MKRN4P-201ENST00000444706 1521 ntBASIC19.44■□□□□ 0.7
VPS4BO75351 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS4BO75351 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 AL691432.2-201ENST00000607222 2038 ntBASIC19.44■□□□□ 0.7
VPS4BO75351 AC116562.4-201ENST00000641316 2276 ntBASIC19.44■□□□□ 0.7
VPS4BO75351 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4BO75351 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4BO75351 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS4BO75351 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
VPS4BO75351 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS4BO75351 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS4BO75351 MIPEPP3-201ENST00000412105 444 ntBASIC19.43■□□□□ 0.7
VPS4BO75351 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS4BO75351 DUSP5P2-201ENST00000426873 1033 ntBASIC19.43■□□□□ 0.7
VPS4BO75351 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS4BO75351 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS4BO75351 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS4BO75351 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS4BO75351 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
VPS4BO75351 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS4BO75351 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4BO75351 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms