Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SDC3O75056 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SDC3O75056 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SDC3O75056 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
SDC3O75056 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SDC3O75056 RBM17P1-201ENST00000453646 1190 ntBASIC19.49■□□□□ 0.71
SDC3O75056 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.49■□□□□ 0.71
SDC3O75056 NUDT16P1-203ENST00000513809 620 ntBASIC19.49■□□□□ 0.71
SDC3O75056 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.49■□□□□ 0.71
SDC3O75056 REXO1L10P-201ENST00000615707 1290 ntBASIC19.49■□□□□ 0.71
SDC3O75056 MIR6786-201ENST00000616843 113 ntBASIC19.49■□□□□ 0.71
SDC3O75056 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SDC3O75056 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SDC3O75056 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SDC3O75056 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SDC3O75056 KRT8P9-201ENST00000558927 1449 ntBASIC19.49■□□□□ 0.71
SDC3O75056 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
SDC3O75056 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.49■□□□□ 0.71
SDC3O75056 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SDC3O75056 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SDC3O75056 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.49■□□□□ 0.71
SDC3O75056 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.48■□□□□ 0.71
SDC3O75056 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.48■□□□□ 0.71
SDC3O75056 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SDC3O75056 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.48■□□□□ 0.71
SDC3O75056 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SDC3O75056 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SDC3O75056 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.48■□□□□ 0.71
SDC3O75056 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.48■□□□□ 0.71
SDC3O75056 RN7SL850P-201ENST00000579959 291 ntBASIC19.48■□□□□ 0.71
SDC3O75056 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.48■□□□□ 0.71
SDC3O75056 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 CR392000.1-201ENST00000624770 1228 ntBASIC19.48■□□□□ 0.71
SDC3O75056 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SDC3O75056 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SDC3O75056 AC079598.2-202ENST00000546624 1451 ntBASIC19.48■□□□□ 0.71
SDC3O75056 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.47■□□□□ 0.71
SDC3O75056 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.47■□□□□ 0.71
SDC3O75056 MIR1238-201ENST00000408483 83 ntBASIC19.47■□□□□ 0.71
SDC3O75056 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.47■□□□□ 0.71
SDC3O75056 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 KRT8P17-201ENST00000453110 1448 ntBASIC19.47■□□□□ 0.71
SDC3O75056 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SDC3O75056 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 AC005229.4-201ENST00000610085 2198 ntBASIC19.47■□□□□ 0.71
SDC3O75056 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.47■□□□□ 0.71
SDC3O75056 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SDC3O75056 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.47■□□□□ 0.71
SDC3O75056 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SDC3O75056 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.46■□□□□ 0.71
SDC3O75056 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.46■□□□□ 0.71
SDC3O75056 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SDC3O75056 TMPOP1-202ENST00000424642 1267 ntBASIC19.46■□□□□ 0.71
SDC3O75056 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.46■□□□□ 0.71
SDC3O75056 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.46■□□□□ 0.71
SDC3O75056 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.46■□□□□ 0.71
SDC3O75056 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 DPP3P2-201ENST00000416030 1696 ntBASIC19.46■□□□□ 0.71
SDC3O75056 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC3O75056 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SDC3O75056 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC3O75056 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.45■□□□□ 0.7
SDC3O75056 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC3O75056 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
SDC3O75056 UNC93B2-201ENST00000285383 730 ntBASIC19.45■□□□□ 0.7
SDC3O75056 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 AL390955.1-201ENST00000428694 934 ntBASIC19.45■□□□□ 0.7
SDC3O75056 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.45■□□□□ 0.7
SDC3O75056 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.45■□□□□ 0.7
SDC3O75056 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.45■□□□□ 0.7
SDC3O75056 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SDC3O75056 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms