Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.89■□□□□ 0.29
SDCBPO00560 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.89■□□□□ 0.29
SDCBPO00560 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.89■□□□□ 0.29
SDCBPO00560 TMEM179-206ENST00000616017 1645 ntBASIC16.88■□□□□ 0.29
SDCBPO00560 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.88■□□□□ 0.29
SDCBPO00560 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.88■□□□□ 0.29
SDCBPO00560 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.88■□□□□ 0.29
SDCBPO00560 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.88■□□□□ 0.29
SDCBPO00560 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
SDCBPO00560 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.88■□□□□ 0.29
SDCBPO00560 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.88■□□□□ 0.29
SDCBPO00560 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.88■□□□□ 0.29
SDCBPO00560 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.88■□□□□ 0.29
SDCBPO00560 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
SDCBPO00560 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.88■□□□□ 0.29
SDCBPO00560 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SDCBPO00560 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SDCBPO00560 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDCBPO00560 TNXA-203ENST00000507684 2038 ntBASIC16.87■□□□□ 0.29
SDCBPO00560 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
SDCBPO00560 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 AC093484.2-201ENST00000580996 2166 ntBASIC16.87■□□□□ 0.29
SDCBPO00560 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 KRT18P11-201ENST00000435214 1283 ntBASIC16.87■□□□□ 0.29
SDCBPO00560 KRT18P5-201ENST00000436075 1291 ntBASIC16.87■□□□□ 0.29
SDCBPO00560 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SDCBPO00560 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SDCBPO00560 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.87■□□□□ 0.29
SDCBPO00560 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC16.87■□□□□ 0.29
SDCBPO00560 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SDCBPO00560 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDCBPO00560 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.87■□□□□ 0.29
SDCBPO00560 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.86■□□□□ 0.29
SDCBPO00560 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.86■□□□□ 0.29
SDCBPO00560 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.86■□□□□ 0.29
SDCBPO00560 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.86■□□□□ 0.29
SDCBPO00560 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.86■□□□□ 0.29
SDCBPO00560 AC016769.1-201ENST00000409132 1010 ntBASIC16.86■□□□□ 0.29
SDCBPO00560 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 AC010536.3-201ENST00000620306 533 ntBASIC16.86■□□□□ 0.29
SDCBPO00560 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SDCBPO00560 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.86■□□□□ 0.29
SDCBPO00560 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.86■□□□□ 0.29
SDCBPO00560 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDCBPO00560 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDCBPO00560 BX119927.1-201ENST00000636596 1552 ntBASIC16.85■□□□□ 0.29
SDCBPO00560 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms