Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.52■□□□□ 0.55
HMGN4O00479 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.52■□□□□ 0.55
HMGN4O00479 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGN4O00479 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.52■□□□□ 0.55
HMGN4O00479 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGN4O00479 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGN4O00479 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGN4O00479 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGN4O00479 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGN4O00479 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGN4O00479 AL050303.2-201ENST00000619798 666 ntBASIC18.51■□□□□ 0.55
HMGN4O00479 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGN4O00479 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGN4O00479 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HMGN4O00479 AP001271.2-201ENST00000624018 1556 ntBASIC18.51■□□□□ 0.55
HMGN4O00479 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGN4O00479 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGN4O00479 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
HMGN4O00479 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGN4O00479 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGN4O00479 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGN4O00479 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGN4O00479 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGN4O00479 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGN4O00479 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGN4O00479 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGN4O00479 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HMGN4O00479 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGN4O00479 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
HMGN4O00479 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HMGN4O00479 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGN4O00479 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 AC093484.2-201ENST00000580996 2166 ntBASIC18.48■□□□□ 0.55
HMGN4O00479 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGN4O00479 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGN4O00479 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 LSM12P1-201ENST00000411836 588 ntBASIC18.48■□□□□ 0.55
HMGN4O00479 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGN4O00479 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGN4O00479 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HMGN4O00479 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGN4O00479 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 PHGDH-210ENST00000641115 1638 ntBASIC18.48■□□□□ 0.55
HMGN4O00479 MKRN4P-201ENST00000444706 1521 ntBASIC18.48■□□□□ 0.55
HMGN4O00479 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
HMGN4O00479 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGN4O00479 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
HMGN4O00479 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGN4O00479 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms