Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CBX4O00257 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CBX4O00257 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CBX4O00257 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.33■□□□□ 0.85
CBX4O00257 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CBX4O00257 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CBX4O00257 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.33■□□□□ 0.85
CBX4O00257 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CBX4O00257 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CBX4O00257 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CBX4O00257 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CBX4O00257 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.32■□□□□ 0.84
CBX4O00257 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.32■□□□□ 0.84
CBX4O00257 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.32■□□□□ 0.84
CBX4O00257 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 C1QBPP2-201ENST00000528754 825 ntBASIC20.32■□□□□ 0.84
CBX4O00257 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.32■□□□□ 0.84
CBX4O00257 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.32■□□□□ 0.84
CBX4O00257 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 RN7SL471P-201ENST00000580476 299 ntBASIC20.32■□□□□ 0.84
CBX4O00257 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.32■□□□□ 0.84
CBX4O00257 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.32■□□□□ 0.84
CBX4O00257 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.32■□□□□ 0.84
CBX4O00257 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CBX4O00257 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.32■□□□□ 0.84
CBX4O00257 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CBX4O00257 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.31■□□□□ 0.84
CBX4O00257 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
CBX4O00257 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CBX4O00257 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.31■□□□□ 0.84
CBX4O00257 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CBX4O00257 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CBX4O00257 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CBX4O00257 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CBX4O00257 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.31■□□□□ 0.84
CBX4O00257 MTDHP1-201ENST00000605323 784 ntBASIC20.31■□□□□ 0.84
CBX4O00257 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CBX4O00257 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CBX4O00257 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.31■□□□□ 0.84
CBX4O00257 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.31■□□□□ 0.84
CBX4O00257 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.3■□□□□ 0.84
CBX4O00257 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 BX119927.1-201ENST00000636596 1552 ntBASIC20.3■□□□□ 0.84
CBX4O00257 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 AL162377.1-201ENST00000618844 1793 ntBASIC20.3■□□□□ 0.84
CBX4O00257 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CBX4O00257 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.3■□□□□ 0.84
CBX4O00257 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CBX4O00257 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CBX4O00257 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CBX4O00257 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CBX4O00257 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CBX4O00257 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CBX4O00257 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CBX4O00257 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CBX4O00257 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.29■□□□□ 0.84
CBX4O00257 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms