Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.43■■□□□ 1.02
LRRC53A6NM62 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRC53A6NM62 RARRES2P6-201ENST00000567333 442 ntBASIC21.42■■□□□ 1.02
LRRC53A6NM62 AC069236.1-201ENST00000604339 616 ntBASIC21.42■■□□□ 1.02
LRRC53A6NM62 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
LRRC53A6NM62 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 BID-214ENST00000617586 542 ntTSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
LRRC53A6NM62 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRC53A6NM62 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 AP000974.1-201ENST00000623909 2387 ntBASIC21.4■■□□□ 1.02
LRRC53A6NM62 BX323043.1-201ENST00000641006 1765 ntBASIC21.4■■□□□ 1.02
LRRC53A6NM62 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRC53A6NM62 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.4■■□□□ 1.02
LRRC53A6NM62 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LRRC53A6NM62 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.02
LRRC53A6NM62 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LRRC53A6NM62 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.02
LRRC53A6NM62 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LRRC53A6NM62 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
LRRC53A6NM62 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
LRRC53A6NM62 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRRC53A6NM62 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRRC53A6NM62 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.39■■□□□ 1.01
LRRC53A6NM62 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRRC53A6NM62 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms