Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CUX1P39880 AP005431.1-201ENST00000618479 319 ntBASIC10.93□□□□□ -0.66
CUX1P39880 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC10.93□□□□□ -0.66
CUX1P39880 OR7E91P-202ENST00000642062 1198 ntBASIC10.93□□□□□ -0.66
CUX1P39880 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 AL353807.3-201ENST00000500626 2505 ntBASIC10.93□□□□□ -0.66
CUX1P39880 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC10.93□□□□□ -0.66
CUX1P39880 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC10.93□□□□□ -0.66
CUX1P39880 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 NRP1-207ENST00000374875 5407 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 LINC00501-201ENST00000425388 2046 ntTSL 2 BASIC10.92□□□□□ -0.66
CUX1P39880 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 DIO2-202ENST00000438257 6136 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
CUX1P39880 AC245452.2-201ENST00000435222 392 ntBASIC10.92□□□□□ -0.66
CUX1P39880 SOCS5P1-201ENST00000440415 949 ntBASIC10.92□□□□□ -0.66
CUX1P39880 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC10.92□□□□□ -0.66
CUX1P39880 RN7SL273P-201ENST00000481561 299 ntBASIC10.92□□□□□ -0.66
CUX1P39880 AC022826.1-201ENST00000519383 805 ntBASIC10.92□□□□□ -0.66
CUX1P39880 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC10.92□□□□□ -0.66
CUX1P39880 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC10.92□□□□□ -0.66
CUX1P39880 AC010327.2-201ENST00000587647 488 ntBASIC10.92□□□□□ -0.66
CUX1P39880 BUB1P1-201ENST00000603541 607 ntBASIC10.92□□□□□ -0.66
CUX1P39880 AC073333.2-201ENST00000603589 769 ntBASIC10.92□□□□□ -0.66
CUX1P39880 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC10.92□□□□□ -0.66
CUX1P39880 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 MIR6085-201ENST00000618314 110 ntBASIC10.92□□□□□ -0.66
CUX1P39880 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC10.92□□□□□ -0.66
CUX1P39880 CTH-203ENST00000411986 2044 ntTSL 2 BASIC10.92□□□□□ -0.66
CUX1P39880 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC10.92□□□□□ -0.66
CUX1P39880 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CUX1P39880 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC10.91□□□□□ -0.66
CUX1P39880 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
CUX1P39880 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC10.91□□□□□ -0.66
CUX1P39880 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 MIR199B-201ENST00000384849 110 ntBASIC10.91□□□□□ -0.66
CUX1P39880 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC10.91□□□□□ -0.66
CUX1P39880 CYP4F32P-201ENST00000426492 504 ntBASIC10.91□□□□□ -0.66
CUX1P39880 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC10.91□□□□□ -0.66
CUX1P39880 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC10.91□□□□□ -0.66
CUX1P39880 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC10.91□□□□□ -0.66
CUX1P39880 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC10.91□□□□□ -0.66
CUX1P39880 NPM1P19-201ENST00000450070 712 ntBASIC10.91□□□□□ -0.66
CUX1P39880 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC10.91□□□□□ -0.66
CUX1P39880 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC10.91□□□□□ -0.66
CUX1P39880 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 AC092332.1-201ENST00000563684 829 ntBASIC10.91□□□□□ -0.66
CUX1P39880 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC10.91□□□□□ -0.66
CUX1P39880 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC10.91□□□□□ -0.66
CUX1P39880 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CUX1P39880 ADAM22-205ENST00000398209 9144 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
CUX1P39880 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC10.91□□□□□ -0.66
CUX1P39880 RNF152-201ENST00000312828 9501 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CUX1P39880 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CUX1P39880 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CUX1P39880 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
CUX1P39880 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
CUX1P39880 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC10.9□□□□□ -0.66
CUX1P39880 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC10.9□□□□□ -0.66
CUX1P39880 AC023194.2-201ENST00000465398 406 ntBASIC10.9□□□□□ -0.66
CUX1P39880 UBFD1P1-201ENST00000473259 814 ntBASIC10.9□□□□□ -0.66
CUX1P39880 IGHVIII-67-4-201ENST00000524281 296 ntBASIC10.9□□□□□ -0.66
CUX1P39880 OR4A13P-201ENST00000529316 942 ntBASIC10.9□□□□□ -0.66
CUX1P39880 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC10.9□□□□□ -0.66
CUX1P39880 AC008555.7-201ENST00000605008 583 ntBASIC10.9□□□□□ -0.66
CUX1P39880 SNORA74.4-201ENST00000607595 199 ntBASIC10.9□□□□□ -0.66
CUX1P39880 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC10.9□□□□□ -0.66
CUX1P39880 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC10.9□□□□□ -0.66
CUX1P39880 AC008627.1-201ENST00000517511 1704 ntBASIC10.9□□□□□ -0.66
CUX1P39880 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CUX1P39880 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms