RNA–Protein interactions for RNA: ENST00000373700.8

HERC4-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERC4, Length 3,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-202ENST00000373700 NISCHQ9Y2I1 1504 aa14.99□□□□□ -0.01
HERC4-202ENST00000373700 DCAF8L2P0C7V8 631 aa14.31□□□□□ -0.12
HERC4-202ENST00000373700 SHROOM4Q9ULL8 1493 aa13.81□□□□□ -0.2
HERC4-202ENST00000373700 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
HERC4-202ENST00000373700 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
HERC4-202ENST00000373700 ABCC9O60706 1549 aa12.82□□□□□ -0.36
HERC4-202ENST00000373700 FAM9AQ8IZU1 332 aaPredicted RBP12.81□□□□□ -0.36
HERC4-202ENST00000373700 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
HERC4-202ENST00000373700 PABPN1Q86U42 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
HERC4-202ENST00000373700 TRIM41Q8WV44 630 aa12.53□□□□□ -0.4
HERC4-202ENST00000373700 TTBK1Q5TCY1 1321 aaPredicted RBP12.51□□□□□ -0.41
HERC4-202ENST00000373700 ZCCHC6Q5VYS8 1495 aaKnown RBP12.47□□□□□ -0.41
HERC4-202ENST00000373700 CHIC1Q5VXU3 224 aa12.46□□□□□ -0.41
HERC4-202ENST00000373700 RANGAP1P46060 587 aaPredicted RBP12.46□□□□□ -0.42
HERC4-202ENST00000373700 LOC105371045A0A1W2PR82 267 aa12.43□□□□□ -0.42
HERC4-202ENST00000373700 CCDC180Q9P1Z9 1646 aa12.38□□□□□ -0.43
HERC4-202ENST00000373700 PPARGC1BQ86YN6 1023 aaKnown RBP12.35□□□□□ -0.43
HERC4-202ENST00000373700 SCRIBQ14160 1630 aa12.32□□□□□ -0.44
HERC4-202ENST00000373700 UBTFP17480 764 aaKnown RBP12.22□□□□□ -0.45
HERC4-202ENST00000373700 HRCP23327 699 aa12.11□□□□□ -0.47
HERC4-202ENST00000373700 APLP2Q06481 763 aa12.09□□□□□ -0.47
HERC4-202ENST00000373700 ATP1B4Q9UN42 357 aaPredicted RBP12.07□□□□□ -0.48
HERC4-202ENST00000373700 TRIM26Q12899 539 aaPredicted RBP12.05□□□□□ -0.48
HERC4-202ENST00000373700 CCER1Q8TC90 406 aaPredicted RBP12.04□□□□□ -0.48
HERC4-202ENST00000373700 RSF1Q96T23 1441 aaPredicted RBP11.95□□□□□ -0.5
HERC4-202ENST00000373700 CECR2Q9BXF3 1484 aa11.95□□□□□ -0.5
HERC4-202ENST00000373700 MYO15BQ96JP2 1530 aa11.9□□□□□ -0.5
HERC4-202ENST00000373700 ZEB1P37275 1124 aaPredicted RBP11.9□□□□□ -0.51
HERC4-202ENST00000373700 RB1CC1Q8TDY2 1594 aa11.89□□□□□ -0.51
HERC4-202ENST00000373700 NACADO15069 1562 aa11.86□□□□□ -0.51
HERC4-202ENST00000373700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
HERC4-202ENST00000373700 DCAF1Q9Y4B6 1507 aa11.84□□□□□ -0.51
HERC4-202ENST00000373700 ITGAEP38570 1179 aa11.83□□□□□ -0.52
HERC4-202ENST00000373700 HNRNPUL2Q1KMD3 747 aaKnown RBP11.8□□□□□ -0.52
HERC4-202ENST00000373700 YTHDC1Q96MU7 727 aaKnown RBP11.76□□□□□ -0.53
HERC4-202ENST00000373700 MROH2BQ7Z745 1585 aa11.75□□□□□ -0.53
HERC4-202ENST00000373700 CSRNP3Q8WYN3 585 aa11.73□□□□□ -0.53
HERC4-202ENST00000373700 P3H3Q8IVL6 736 aa11.7□□□□□ -0.54
HERC4-202ENST00000373700 CENPBP07199 599 aaPredicted RBP11.63□□□□□ -0.55
HERC4-202ENST00000373700 ARID3CA6NKF2 412 aa11.63□□□□□ -0.55
HERC4-202ENST00000373700 FBLN2P98095 1184 aa11.61□□□□□ -0.55
HERC4-202ENST00000373700 WIZO95785 1651 aa11.61□□□□□ -0.55
HERC4-202ENST00000373700 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
HERC4-202ENST00000373700 BAZ1BQ9UIG0 1483 aaKnown RBP11.58□□□□□ -0.56
HERC4-202ENST00000373700 CCDC88BA6NC98 1476 aa11.53□□□□□ -0.56
HERC4-202ENST00000373700 ABCC8Q09428 1581 aa11.53□□□□□ -0.56
HERC4-202ENST00000373700 DIEXFQ68CQ4 756 aaKnown RBP11.53□□□□□ -0.56
HERC4-202ENST00000373700 FAM50AQ14320 339 aaKnown RBP11.52□□□□□ -0.57
HERC4-202ENST00000373700 SOGA1O94964 1423 aa11.5□□□□□ -0.57
HERC4-202ENST00000373700 WRNQ14191 1432 aaPredicted RBP eCLIP11.49□□□□□ -0.571e-6■■■■■ 58.5
HERC4-202ENST00000373700 PELP1Q8IZL8 1130 aaKnown RBP11.38□□□□□ -0.59
HERC4-202ENST00000373700 SMARCA4P51532 1647 aa11.38□□□□□ -0.59
HERC4-202ENST00000373700 CNGB1Q14028 1251 aaPredicted RBP11.37□□□□□ -0.59
HERC4-202ENST00000373700 CEP162Q5TB80 1403 aa11.37□□□□□ -0.59
HERC4-202ENST00000373700 NEUROD1Q13562 356 aa11.37□□□□□ -0.59
HERC4-202ENST00000373700 ATAD2BQ9ULI0 1458 aa11.36□□□□□ -0.59
HERC4-202ENST00000373700 MYT1LQ9UL68 1186 aa11.36□□□□□ -0.59
HERC4-202ENST00000373700 CLIP1P30622 1438 aa11.34□□□□□ -0.59
HERC4-202ENST00000373700 RUSC2Q8N2Y8 1516 aa11.34□□□□□ -0.59
HERC4-202ENST00000373700 TOP2AP11388 1531 aaKnown RBP11.34□□□□□ -0.59
HERC4-202ENST00000373700 GTF3C3Q9Y5Q9 886 aa11.32□□□□□ -0.6
HERC4-202ENST00000373700 ZNF316A6NFI3 1004 aaPredicted RBP11.3□□□□□ -0.6
HERC4-202ENST00000373700 TRIM52Q96A61 297 aa11.29□□□□□ -0.6
HERC4-202ENST00000373700 POLR3GLQ9BT43 218 aa11.29□□□□□ -0.6
HERC4-202ENST00000373700 GOLGA3Q08378 1498 aa11.28□□□□□ -0.6
HERC4-202ENST00000373700 SMARCA2P51531 1590 aa11.28□□□□□ -0.6
HERC4-202ENST00000373700 ZNF777Q9ULD5 760 aaPredicted RBP11.27□□□□□ -0.6
HERC4-202ENST00000373700 DNAJC5BQ9UF47 199 aa11.26□□□□□ -0.61
HERC4-202ENST00000373700 KIF27Q86VH2 1401 aa11.25□□□□□ -0.61
HERC4-202ENST00000373700 TNIKQ9UKE5 1360 aa11.24□□□□□ -0.61
HERC4-202ENST00000373700 CUX2O14529 1486 aa11.24□□□□□ -0.61
HERC4-202ENST00000373700 CHIC2Q9UKJ5 165 aa11.24□□□□□ -0.61
HERC4-202ENST00000373700 TDRD9Q8NDG6 1382 aaKnown RBP11.22□□□□□ -0.61
HERC4-202ENST00000373700 CHMP7Q8WUX9 453 aaPredicted RBP11.22□□□□□ -0.61
HERC4-202ENST00000373700 EEA1Q15075 1411 aa11.22□□□□□ -0.61
HERC4-202ENST00000373700 ACIN1Q9UKV3 1341 aaKnown RBP11.21□□□□□ -0.62
HERC4-202ENST00000373700 CEP164Q9UPV0 1460 aa11.2□□□□□ -0.62
HERC4-202ENST00000373700 NEFLP07196 543 aa11.19□□□□□ -0.62
HERC4-202ENST00000373700 BICRAQ9NZM4 1560 aa11.18□□□□□ -0.62
HERC4-202ENST00000373700 CADPSQ9ULU8 1353 aa11.18□□□□□ -0.62
HERC4-202ENST00000373700 ZNF326Q5BKZ1 582 aaKnown RBP11.18□□□□□ -0.62
HERC4-202ENST00000373700 CARMIL1Q5VZK9 1371 aa11.17□□□□□ -0.62
HERC4-202ENST00000373700 KANK4Q5T7N3 995 aaPredicted RBP11.16□□□□□ -0.62
HERC4-202ENST00000373700 SCAF1Q9H7N4 1312 aaKnown RBP11.16□□□□□ -0.62
HERC4-202ENST00000373700 EIF4G1Q04637 1599 aaKnown RBP11.16□□□□□ -0.62
HERC4-202ENST00000373700 RAPGEF2Q9Y4G8 1499 aa11.15□□□□□ -0.62
HERC4-202ENST00000373700 BCANQ96GW7 911 aa11.14□□□□□ -0.63
HERC4-202ENST00000373700 ERCC6Q03468 1493 aa11.14□□□□□ -0.63
HERC4-202ENST00000373700 MIER1Q8N108 512 aa11.13□□□□□ -0.63
HERC4-202ENST00000373700 HIRIP3Q9BW71 556 aaPredicted RBP11.12□□□□□ -0.63
HERC4-202ENST00000373700 MTUS2Q5JR59 1369 aa11.12□□□□□ -0.63
HERC4-202ENST00000373700 RRP7BPQ9NSQ0 103 aa11.1□□□□□ -0.63
HERC4-202ENST00000373700 NESP48681 1621 aa11.08□□□□□ -0.64
HERC4-202ENST00000373700 UNC13AQ9UPW8 1703 aa11.08□□□□□ -0.64
HERC4-202ENST00000373700 NCAPD3P42695 1498 aa11.07□□□□□ -0.64
HERC4-202ENST00000373700 KCNH8Q96L42 1107 aa11.06□□□□□ -0.64
HERC4-202ENST00000373700 FANCD2Q9BXW9 1451 aa11.06□□□□□ -0.64
HERC4-202ENST00000373700 DDX10Q13206 875 aaKnown RBP11.06□□□□□ -0.64
HERC4-202ENST00000373700 CDK11AQ9UQ88 783 aaPredicted RBP11.05□□□□□ -0.64
HERC4-202ENST00000373700 RAD54L2Q9Y4B4 1467 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms