Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNX18P13-201ENST00000412442 529 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 NIP7P1-201ENST00000433227 512 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 HMGB3P10-201ENST00000434734 572 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 ST13P2-201ENST00000438916 1109 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AL136115.1-201ENST00000447478 517 ntTSL 2 BASIC8.42□□□□□ -1.06
HMGB1P09429 AL157884.3-201ENST00000448273 1184 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 RPS4XP23-201ENST00000487801 237 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 RBMS2P1-201ENST00000525031 1226 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC8.42□□□□□ -1.06
HMGB1P09429 OR5M4P-201ENST00000529436 925 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 AC126177.6-201ENST00000550420 1009 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC8.42□□□□□ -1.06
HMGB1P09429 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC8.42□□□□□ -1.06
HMGB1P09429 AC245128.3-201ENST00000594721 748 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AC012640.3-201ENST00000607847 430 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 AL139254.2-202ENST00000641937 1156 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC8.42□□□□□ -1.06
HMGB1P09429 TRDMT1-210ENST00000488990 1301 ntTSL 2 BASIC8.42□□□□□ -1.06
HMGB1P09429 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC8.42□□□□□ -1.06
HMGB1P09429 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC8.42□□□□□ -1.06
HMGB1P09429 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 AC015871.3-201ENST00000618835 2261 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.06
HMGB1P09429 CTAGE11P-201ENST00000451540 2353 ntBASIC8.42□□□□□ -1.06
HMGB1P09429 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HMGB1P09429 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 RMST-210ENST00000640149 2844 ntTSL 5 BASIC8.41□□□□□ -1.06
HMGB1P09429 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC8.41□□□□□ -1.06
HMGB1P09429 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC100810.3-201ENST00000633189 2240 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC8.41□□□□□ -1.06
HMGB1P09429 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
HMGB1P09429 RPL10P16-201ENST00000325000 645 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 RNU6-152P-201ENST00000384037 107 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 TYMSP1-201ENST00000407851 869 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 CYP4F34P-201ENST00000425951 481 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 VDAC2P3-201ENST00000430995 828 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 AC104162.1-204ENST00000443346 708 ntTSL 3 BASIC8.41□□□□□ -1.06
HMGB1P09429 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC8.41□□□□□ -1.06
HMGB1P09429 NDUFB4P1-201ENST00000462398 381 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 RPL5P33-201ENST00000487833 905 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC8.41□□□□□ -1.06
HMGB1P09429 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 AL049829.3-202ENST00000604278 711 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 AC007620.3-201ENST00000608131 497 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 AL352984.2-201ENST00000611153 546 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
HMGB1P09429 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC8.41□□□□□ -1.06
HMGB1P09429 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC8.41□□□□□ -1.06
HMGB1P09429 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC8.41□□□□□ -1.06
HMGB1P09429 UG0898H09-202ENST00000623646 7040 ntBASIC8.41□□□□□ -1.06
HMGB1P09429 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC8.41□□□□□ -1.06
HMGB1P09429 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC8.41□□□□□ -1.06
HMGB1P09429 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC8.41□□□□□ -1.06
HMGB1P09429 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 AC104837.1-201ENST00000444644 1587 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
HMGB1P09429 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 EEF1A1P30-201ENST00000429708 1315 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 RPSAP44-201ENST00000406712 884 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 RNU4ATAC2P-201ENST00000408674 126 ntBASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms