Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC008385.1-201ENST00000604421 355 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 AC008592.5-201ENST00000607856 547 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 AC079779.3-218ENST00000612487 940 ntTSL 5 BASIC5.18□□□□□ -1.58
CXCL1P09341 MIR6872-201ENST00000612981 62 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 AL049541.2-201ENST00000626377 555 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.18□□□□□ -1.58
CXCL1P09341 HCCAT5-202ENST00000642127 1029 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 AP002512.4-202ENST00000641599 4530 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.18□□□□□ -1.58
CXCL1P09341 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 AC092451.3-201ENST00000625067 1343 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.18□□□□□ -1.58
CXCL1P09341 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC5.18□□□□□ -1.58
CXCL1P09341 SAMMSON-203ENST00000641005 2168 ntBASIC5.18□□□□□ -1.58
CXCL1P09341 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
CXCL1P09341 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CXCL1P09341 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC5.18□□□□□ -1.58
CXCL1P09341 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 CCNC-204ENST00000482541 1704 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CXCL1P09341 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC109446.4-201ENST00000623235 2755 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC016745.2-201ENST00000608834 3443 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 IFT43-201ENST00000238628 816 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 Metazoa_SRP.2-201ENST00000359385 269 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 RNA5SP260-201ENST00000363849 111 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 C1orf146-202ENST00000370375 830 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 RPL23AP17-201ENST00000401064 499 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 RN7SKP254-201ENST00000410685 310 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 MED15P8-201ENST00000411601 545 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 SMARCE1P1-201ENST00000417747 1186 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 AC231533.2-201ENST00000419045 978 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 AL049646.2-201ENST00000436848 258 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 AL137027.1-201ENST00000440358 444 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 GTF2F2P2-201ENST00000445825 721 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 AL135929.1-201ENST00000449287 552 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 PSMA6P2-201ENST00000457574 686 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 RN7SL392P-201ENST00000473024 299 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 RN7SL563P-201ENST00000481233 298 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 AC008040.4-201ENST00000494834 768 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 RN7SL775P-201ENST00000498361 336 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 SCARNA20.3-201ENST00000516913 131 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC5.17□□□□□ -1.58
CXCL1P09341 C8orf87-201ENST00000521906 588 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 CRYAB-203ENST00000525823 915 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 RAP1B-230ENST00000543697 734 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 ETFRF1-210ENST00000556927 833 ntAPPRIS ALT1 TSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC090699.1-201ENST00000586264 321 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 APOC2-204ENST00000591597 447 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC010320.1-201ENST00000599775 578 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 AP001267.4-201ENST00000602598 545 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 PCA3_2.1-201ENST00000612507 409 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 AC026468.1-201ENST00000614981 107 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 AP003068.4-201ENST00000623192 802 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 AC000095.2-202ENST00000637415 154 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 Z95114.1-201ENST00000624264 14574 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.17□□□□□ -1.58
CXCL1P09341 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CXCL1P09341 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.17□□□□□ -1.58
CXCL1P09341 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 AL157831.2-201ENST00000564681 3095 ntBASIC5.17□□□□□ -1.58
CXCL1P09341 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.17□□□□□ -1.58
CXCL1P09341 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CXCL1P09341 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms