Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC11.1□□□□□ -0.63
CUX1P39880 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC11.1□□□□□ -0.63
CUX1P39880 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC11.1□□□□□ -0.63
CUX1P39880 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
CUX1P39880 DPY19L4-201ENST00000414645 6197 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 AC099753.1-201ENST00000634947 2118 ntTSL 5 BASIC11.1□□□□□ -0.63
CUX1P39880 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
CUX1P39880 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
CUX1P39880 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
CUX1P39880 MBP-206ENST00000397863 4800 ntTSL 3 BASIC11.1□□□□□ -0.63
CUX1P39880 RN7SKP69-201ENST00000365390 305 ntBASIC11.09□□□□□ -0.63
CUX1P39880 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC11.09□□□□□ -0.63
CUX1P39880 AC008521.2-201ENST00000591021 259 ntBASIC11.09□□□□□ -0.63
CUX1P39880 IGKV2OR2-10-201ENST00000613976 311 ntBASIC11.09□□□□□ -0.63
CUX1P39880 MIR4302-201ENST00000638058 60 ntBASIC11.09□□□□□ -0.63
CUX1P39880 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 DMBT1-202ENST00000338354 7686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 DMBT1-204ENST00000368909 7686 ntAPPRIS P4 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 DMBT1-207ENST00000619379 7686 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 KARSP1-201ENST00000451871 1752 ntBASIC11.09□□□□□ -0.63
CUX1P39880 RNPC3-208ENST00000533099 3641 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC11.09□□□□□ -0.63
CUX1P39880 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 GOLGA8B-202ENST00000438958 4252 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CUX1P39880 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 KIF23-203ENST00000395392 3357 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 AL096800.1-201ENST00000405326 893 ntBASIC11.09□□□□□ -0.63
CUX1P39880 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC11.09□□□□□ -0.63
CUX1P39880 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC11.09□□□□□ -0.63
CUX1P39880 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 LYARP1-201ENST00000436977 1501 ntBASIC11.09□□□□□ -0.63
CUX1P39880 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 SEPHS1P4-201ENST00000446112 1176 ntBASIC11.09□□□□□ -0.63
CUX1P39880 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 SNX18P24-201ENST00000505249 671 ntBASIC11.09□□□□□ -0.63
CUX1P39880 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC11.09□□□□□ -0.63
CUX1P39880 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CUX1P39880 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC11.09□□□□□ -0.63
CUX1P39880 AC073046.2-201ENST00000604756 527 ntBASIC11.09□□□□□ -0.63
CUX1P39880 AC100767.2-201ENST00000604840 693 ntBASIC11.09□□□□□ -0.63
CUX1P39880 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC11.09□□□□□ -0.63
CUX1P39880 AC073389.3-201ENST00000609434 935 ntBASIC11.09□□□□□ -0.63
CUX1P39880 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CUX1P39880 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC11.08□□□□□ -0.64
CUX1P39880 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 AC091305.2-201ENST00000624049 1576 ntBASIC11.08□□□□□ -0.64
CUX1P39880 LRRC4C-202ENST00000527150 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 CKAP2L-201ENST00000302450 4533 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC11.08□□□□□ -0.64
CUX1P39880 VTRNA3-1P-201ENST00000362552 102 ntBASIC11.08□□□□□ -0.64
CUX1P39880 SNORA17A-201ENST00000391185 133 ntBASIC11.08□□□□□ -0.64
CUX1P39880 PRELID1P2-201ENST00000407805 396 ntBASIC11.08□□□□□ -0.64
CUX1P39880 RN7SKP206-201ENST00000410823 293 ntBASIC11.08□□□□□ -0.64
CUX1P39880 AC009963.3-201ENST00000458090 486 ntBASIC11.08□□□□□ -0.64
CUX1P39880 AC104109.1-201ENST00000498563 436 ntBASIC11.08□□□□□ -0.64
CUX1P39880 LDHAP1-201ENST00000509421 992 ntBASIC11.08□□□□□ -0.64
CUX1P39880 LECT2-203ENST00000512872 762 ntTSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 FAU-203ENST00000525297 355 ntTSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 AC106785.4-201ENST00000569492 412 ntBASIC11.08□□□□□ -0.64
CUX1P39880 MIR6768-201ENST00000610734 72 ntBASIC11.08□□□□□ -0.64
CUX1P39880 AC005277.2-201ENST00000617898 390 ntBASIC11.08□□□□□ -0.64
CUX1P39880 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC11.08□□□□□ -0.64
CUX1P39880 SNORA17.5-201ENST00000630429 132 ntBASIC11.08□□□□□ -0.64
CUX1P39880 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
CUX1P39880 AC015871.4-201ENST00000624650 2260 ntBASIC11.08□□□□□ -0.64
CUX1P39880 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
CUX1P39880 DLG1-208ENST00000419354 3994 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CUX1P39880 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 ADAMTS3-201ENST00000286657 6409 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 AC018717.1-201ENST00000457712 1505 ntBASIC11.07□□□□□ -0.64
CUX1P39880 VSIG1-201ENST00000217957 2997 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC11.07□□□□□ -0.64
CUX1P39880 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CUX1P39880 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC11.07□□□□□ -0.64
CUX1P39880 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC11.07□□□□□ -0.64
CUX1P39880 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms