Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CTNNA2-209ENST00000466387 4349 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL5A1P20908 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A1P20908 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A1P20908 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
COL5A1P20908 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A1P20908 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
COL5A1P20908 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A1P20908 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A1P20908 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL5A1P20908 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL5A1P20908 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A1P20908 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 AC008753.1-201ENST00000423096 284 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A1P20908 GTF2IP14-201ENST00000441415 586 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 AL359839.1-201ENST00000451975 1160 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC6.53□□□□□ -1.36
COL5A1P20908 RPS14P8-201ENST00000478778 369 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A1P20908 AL133399.1-201ENST00000527476 298 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.53□□□□□ -1.36
COL5A1P20908 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC6.53□□□□□ -1.36
COL5A1P20908 AC026956.1-201ENST00000558741 396 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 MIR6768-201ENST00000610734 72 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 uc_338.31-201ENST00000615595 186 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 PSMD10P2-202ENST00000626135 819 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A1P20908 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
COL5A1P20908 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 C2orf49-201ENST00000258457 4768 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 VSIG1-201ENST00000217957 2997 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL5A1P20908 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC6.53□□□□□ -1.36
COL5A1P20908 AL035422.1-201ENST00000414193 397 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 AL121916.1-201ENST00000429405 308 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 DEFA11P-201ENST00000446470 261 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A1P20908 HMGN1P17-201ENST00000513734 295 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 CTSLP2-201ENST00000580501 394 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.53□□□□□ -1.36
COL5A1P20908 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A1P20908 AC020914.7-201ENST00000594477 545 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 AP002345.2-201ENST00000609961 904 ntBASIC6.53□□□□□ -1.36
COL5A1P20908 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL5A1P20908 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC6.52□□□□□ -1.37
COL5A1P20908 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 SYNJ1-201ENST00000357345 7059 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL5A1P20908 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A1P20908 WDR11-201ENST00000263461 4732 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A1P20908 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL5A1P20908 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.52□□□□□ -1.37
COL5A1P20908 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 PIGN-221ENST00000638183 4046 ntTSL 5 BASIC6.52□□□□□ -1.37
COL5A1P20908 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COL5A1P20908 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A1P20908 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A1P20908 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A1P20908 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.52□□□□□ -1.37
COL5A1P20908 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms