Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COMMD3-BMI1R4GMX3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COMMD3-BMI1R4GMX3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COMMD3-BMI1R4GMX3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.69■□□□□ 0.58
COMMD3-BMI1R4GMX3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.69■□□□□ 0.58
COMMD3-BMI1R4GMX3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COMMD3-BMI1R4GMX3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COMMD3-BMI1R4GMX3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COMMD3-BMI1R4GMX3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 PBX2P1-201ENST00000493219 1291 ntBASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 AP001330.3-201ENST00000520123 633 ntBASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 TSPY26P-201ENST00000476365 1326 ntBASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 AC009237.3-201ENST00000393279 1427 ntBASIC18.66■□□□□ 0.58
COMMD3-BMI1R4GMX3 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 AC106739.1-201ENST00000617035 715 ntBASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 AC105233.4-201ENST00000642045 216 ntBASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 AC055733.4-201ENST00000638462 1354 ntBASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.65■□□□□ 0.58
COMMD3-BMI1R4GMX3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.64■□□□□ 0.58
COMMD3-BMI1R4GMX3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.64■□□□□ 0.58
COMMD3-BMI1R4GMX3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 AC135050.7-201ENST00000624508 2218 ntBASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.64■□□□□ 0.57
COMMD3-BMI1R4GMX3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms