Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 LINC00565-201ENST00000562710 2331 ntBASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 KRT8P17-201ENST00000453110 1448 ntBASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CTDP1Q9Y5B0 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 AL353807.1-201ENST00000427475 662 ntBASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
CTDP1Q9Y5B0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 PTBP1P-201ENST00000554374 1601 ntBASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 DPP3P2-201ENST00000416030 1696 ntBASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 F2R-202ENST00000505600 442 ntTSL 2 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 PENK-204ENST00000518770 863 ntTSL 2 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CTDP1Q9Y5B0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTDP1Q9Y5B0 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms