Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 AC083880.1-201ENST00000608266 535 ntBASIC19.23■□□□□ 0.67
VPS4AQ9UN37 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 AC243732.1-201ENST00000612648 864 ntBASIC19.22■□□□□ 0.67
VPS4AQ9UN37 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4AQ9UN37 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS4AQ9UN37 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 RBM17P2-201ENST00000616397 1405 ntBASIC19.2■□□□□ 0.66
VPS4AQ9UN37 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 AC091799.1-201ENST00000422823 811 ntBASIC19.2■□□□□ 0.66
VPS4AQ9UN37 AC007322.3-201ENST00000426526 701 ntBASIC19.2■□□□□ 0.66
VPS4AQ9UN37 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.2■□□□□ 0.66
VPS4AQ9UN37 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 MYC-209ENST00000641252 345 ntBASIC19.2■□□□□ 0.66
VPS4AQ9UN37 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4AQ9UN37 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms