Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 AL121829.2-201ENST00000620908 328 ntBASIC21.38■■□□□ 1.01
SIX4Q9UIU6 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX4Q9UIU6 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 GCSHP5-201ENST00000443090 522 ntBASIC21.37■■□□□ 1.01
SIX4Q9UIU6 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SIX4Q9UIU6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SIX4Q9UIU6 AC116351.2-201ENST00000606540 1585 ntBASIC21.36■■□□□ 1.01
SIX4Q9UIU6 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 AC112907.3-201ENST00000577781 2400 ntBASIC21.35■■□□□ 1.01
SIX4Q9UIU6 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.35■■□□□ 1.01
SIX4Q9UIU6 AL121906.2-201ENST00000621597 723 ntBASIC21.35■■□□□ 1.01
SIX4Q9UIU6 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.35■■□□□ 1.01
SIX4Q9UIU6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 PHGDH-210ENST00000641115 1638 ntBASIC21.34■■□□□ 1.01
SIX4Q9UIU6 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 RPPH1-201ENST00000516869 333 ntBASIC21.34■■□□□ 1.01
SIX4Q9UIU6 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 AL359736.2-201ENST00000621992 437 ntBASIC21.34■■□□□ 1.01
SIX4Q9UIU6 AL023875.1-201ENST00000640777 796 ntBASIC21.34■■□□□ 1.01
SIX4Q9UIU6 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX4Q9UIU6 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 AC018553.1-201ENST00000616682 1458 ntBASIC21.33■■□□□ 1.01
SIX4Q9UIU6 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms