Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 SLC25A3P1-201ENST00000443844 931 ntBASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 AC087388.1-201ENST00000571370 1112 ntBASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 AC116562.2-201ENST00000507042 360 ntBASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LIMD1Q9UGP4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMD1Q9UGP4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMD1Q9UGP4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMD1Q9UGP4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 KSR1P1-201ENST00000446298 240 ntBASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 WWOX-216ENST00000569818 525 ntBASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms