Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 KRT17P3-201ENST00000420566 1262 ntBASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 AC120498.8-201ENST00000614275 531 ntBASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 TMEM191A-211ENST00000637163 1067 ntBASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 ITM2C-210ENST00000620962 501 ntBASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD1Q96NR3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 GABARAPL3-202ENST00000624044 1851 ntBASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 POM121L13P-201ENST00000422362 380 ntBASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 AC128676.1-201ENST00000454392 318 ntBASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD1Q96NR3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD1Q96NR3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTCHD1Q96NR3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PTCHD1Q96NR3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms