Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 AC124016.1-201ENST00000609552 612 ntBASIC21.34■■□□□ 1.01
ZNF560Q96MR9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 BX119927.1-201ENST00000636596 1552 ntBASIC21.34■■□□□ 1.01
ZNF560Q96MR9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZNF560Q96MR9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.33■■□□□ 1
ZNF560Q96MR9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1
ZNF560Q96MR9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZNF560Q96MR9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.32■■□□□ 1
ZNF560Q96MR9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.32■■□□□ 1
ZNF560Q96MR9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
ZNF560Q96MR9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF560Q96MR9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF560Q96MR9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.32■■□□□ 1
ZNF560Q96MR9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.32■■□□□ 1
ZNF560Q96MR9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.32■■□□□ 1
ZNF560Q96MR9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
ZNF560Q96MR9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.32■■□□□ 1
ZNF560Q96MR9 AP006294.2-201ENST00000641667 209 ntBASIC21.32■■□□□ 1
ZNF560Q96MR9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZNF560Q96MR9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF560Q96MR9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
ZNF560Q96MR9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
ZNF560Q96MR9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.31■■□□□ 1
ZNF560Q96MR9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
ZNF560Q96MR9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.31■■□□□ 1
ZNF560Q96MR9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.31■■□□□ 1
ZNF560Q96MR9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.31■■□□□ 1
ZNF560Q96MR9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 AC110285.5-201ENST00000611501 352 ntBASIC21.31■■□□□ 1
ZNF560Q96MR9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.31■■□□□ 1
ZNF560Q96MR9 AC066615.1-201ENST00000640911 628 ntBASIC21.31■■□□□ 1
ZNF560Q96MR9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
ZNF560Q96MR9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
ZNF560Q96MR9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.3■■□□□ 1
ZNF560Q96MR9 PHGDH-210ENST00000641115 1638 ntBASIC21.3■■□□□ 1
ZNF560Q96MR9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
ZNF560Q96MR9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
ZNF560Q96MR9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.3■■□□□ 1
ZNF560Q96MR9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.3■■□□□ 1
ZNF560Q96MR9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.3■■□□□ 1
ZNF560Q96MR9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.3■■□□□ 1
ZNF560Q96MR9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
ZNF560Q96MR9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 AC116351.2-201ENST00000606540 1585 ntBASIC21.3■■□□□ 1
ZNF560Q96MR9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF560Q96MR9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.3■■□□□ 1
ZNF560Q96MR9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.29■■□□□ 1
ZNF560Q96MR9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
ZNF560Q96MR9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
ZNF560Q96MR9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.29■■□□□ 1
ZNF560Q96MR9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
ZNF560Q96MR9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.29■■□□□ 1
ZNF560Q96MR9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.29■■□□□ 1
ZNF560Q96MR9 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.29■■□□□ 1
ZNF560Q96MR9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.29■■□□□ 1
ZNF560Q96MR9 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.29■■□□□ 1
ZNF560Q96MR9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF560Q96MR9 AL512408.1-201ENST00000569378 2000 ntBASIC21.29■■□□□ 1
ZNF560Q96MR9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms