Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.12■□□□□ 0.65
CLHC1Q8NHS4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 TMEM179-206ENST00000616017 1645 ntBASIC19.11■□□□□ 0.65
CLHC1Q8NHS4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 MCRIP2P1-201ENST00000394346 511 ntBASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 PTBP1P-201ENST00000554374 1601 ntBASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLHC1Q8NHS4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 AL355472.2-201ENST00000422958 438 ntBASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 AC006015.1-201ENST00000429970 570 ntBASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 CYP2T1P-201ENST00000432607 1285 ntBASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CLHC1Q8NHS4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CLHC1Q8NHS4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLHC1Q8NHS4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLHC1Q8NHS4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLHC1Q8NHS4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 AL162430.1-201ENST00000480705 870 ntBASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.08■□□□□ 0.64
CLHC1Q8NHS4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms