Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 AL121832.2-201ENST00000610979 668 ntBASIC18.12■□□□□ 0.49
NIPAL3Q6P499 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.12■□□□□ 0.49
NIPAL3Q6P499 AC100791.3-201ENST00000617619 330 ntBASIC18.12■□□□□ 0.49
NIPAL3Q6P499 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
NIPAL3Q6P499 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AL512625.2-201ENST00000417533 625 ntBASIC18.11■□□□□ 0.49
NIPAL3Q6P499 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AC087633.2-202ENST00000565166 1439 ntBASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AC010980.2-201ENST00000587099 1412 ntBASIC18.11■□□□□ 0.49
NIPAL3Q6P499 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
NIPAL3Q6P499 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 MKRN4P-201ENST00000444706 1521 ntBASIC18.1■□□□□ 0.49
NIPAL3Q6P499 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 AL355472.2-201ENST00000422958 438 ntBASIC18.1■□□□□ 0.49
NIPAL3Q6P499 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.1■□□□□ 0.49
NIPAL3Q6P499 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NIPAL3Q6P499 AL691432.2-201ENST00000607222 2038 ntBASIC18.1■□□□□ 0.49
NIPAL3Q6P499 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms