Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 AC061975.6-201ENST00000579045 1553 ntBASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 UNC93B4-201ENST00000505679 747 ntBASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.47■□□□□ 0.23
PDLIM3Q53GG5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 POU5F1P4-201ENST00000413175 1085 ntBASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 AC105036.2-201ENST00000569468 176 ntBASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDLIM3Q53GG5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
PDLIM3Q53GG5 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
PDLIM3Q53GG5 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PDLIM3Q53GG5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PDLIM3Q53GG5 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PDLIM3Q53GG5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PDLIM3Q53GG5 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 RARRES2P4-201ENST00000514074 484 ntBASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDLIM3Q53GG5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 AC092720.2-201ENST00000602388 1665 ntBASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 AFG3L1P-217ENST00000557444 2447 ntBASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.44■□□□□ 0.22
PDLIM3Q53GG5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms