Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC144BQ3MJ40 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 AC112907.3-201ENST00000577781 2400 ntBASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC144BQ3MJ40 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 MTDHP1-201ENST00000605323 784 ntBASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC144BQ3MJ40 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC144BQ3MJ40 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 SERP1-205ENST00000487153 657 ntTSL 4 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 AC073912.3-201ENST00000624414 853 ntBASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms