Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PTPN9P43378 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.76■□□□□ 0.91
PTPN9P43378 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.76■□□□□ 0.91
PTPN9P43378 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN9P43378 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PTPN9P43378 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.76■□□□□ 0.91
PTPN9P43378 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN9P43378 PHGDH-210ENST00000641115 1638 ntBASIC20.75■□□□□ 0.91
PTPN9P43378 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN9P43378 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN9P43378 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.75■□□□□ 0.91
PTPN9P43378 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN9P43378 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.75■□□□□ 0.91
PTPN9P43378 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN9P43378 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN9P43378 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN9P43378 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.75■□□□□ 0.91
PTPN9P43378 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN9P43378 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN9P43378 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN9P43378 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
PTPN9P43378 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.75■□□□□ 0.91
PTPN9P43378 AC009237.14-201ENST00000609975 1594 ntBASIC20.75■□□□□ 0.91
PTPN9P43378 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN9P43378 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN9P43378 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.74■□□□□ 0.91
PTPN9P43378 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PTPN9P43378 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN9P43378 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN9P43378 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN9P43378 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
PTPN9P43378 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.74■□□□□ 0.91
PTPN9P43378 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
PTPN9P43378 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PTPN9P43378 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.74■□□□□ 0.91
PTPN9P43378 AC006557.6-201ENST00000623071 864 ntBASIC20.74■□□□□ 0.91
PTPN9P43378 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
PTPN9P43378 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN9P43378 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN9P43378 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
PTPN9P43378 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PTPN9P43378 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN9P43378 AP001271.2-201ENST00000624018 1556 ntBASIC20.73■□□□□ 0.91
PTPN9P43378 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN9P43378 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
PTPN9P43378 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN9P43378 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN9P43378 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN9P43378 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PTPN9P43378 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.72■□□□□ 0.91
PTPN9P43378 PCDHAC2-203ENST00000615316 3011 ntBASIC20.72■□□□□ 0.91
PTPN9P43378 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.72■□□□□ 0.91
PTPN9P43378 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.72■□□□□ 0.91
PTPN9P43378 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.72■□□□□ 0.91
PTPN9P43378 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN9P43378 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.72■□□□□ 0.91
PTPN9P43378 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN9P43378 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN9P43378 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.72■□□□□ 0.91
PTPN9P43378 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.71■□□□□ 0.91
PTPN9P43378 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.71■□□□□ 0.91
PTPN9P43378 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PTPN9P43378 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.71■□□□□ 0.91
PTPN9P43378 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.71■□□□□ 0.91
PTPN9P43378 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.71■□□□□ 0.91
PTPN9P43378 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PTPN9P43378 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms