Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.45■□□□□ 0.38
COL8A1P27658 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.45■□□□□ 0.38
COL8A1P27658 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 TSPY14P-201ENST00000303979 915 ntBASIC17.45■□□□□ 0.38
COL8A1P27658 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.45■□□□□ 0.38
COL8A1P27658 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.45■□□□□ 0.38
COL8A1P27658 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.45■□□□□ 0.38
COL8A1P27658 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.45■□□□□ 0.38
COL8A1P27658 AC012313.10-201ENST00000623509 926 ntBASIC17.45■□□□□ 0.38
COL8A1P27658 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.45■□□□□ 0.38
COL8A1P27658 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.45■□□□□ 0.38
COL8A1P27658 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 IER3-202ENST00000376377 1350 ntBASIC17.44■□□□□ 0.38
COL8A1P27658 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.44■□□□□ 0.38
COL8A1P27658 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.44■□□□□ 0.38
COL8A1P27658 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.44■□□□□ 0.38
COL8A1P27658 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.44■□□□□ 0.38
COL8A1P27658 AC092647.4-201ENST00000457211 535 ntBASIC17.44■□□□□ 0.38
COL8A1P27658 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.44■□□□□ 0.38
COL8A1P27658 FAM86EP-206ENST00000510506 987 ntBASIC17.44■□□□□ 0.38
COL8A1P27658 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 AL121906.2-201ENST00000621597 723 ntBASIC17.44■□□□□ 0.38
COL8A1P27658 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.44■□□□□ 0.38
COL8A1P27658 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.44■□□□□ 0.38
COL8A1P27658 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL8A1P27658 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL8A1P27658 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.43■□□□□ 0.38
COL8A1P27658 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC17.43■□□□□ 0.38
COL8A1P27658 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.43■□□□□ 0.38
COL8A1P27658 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.43■□□□□ 0.38
COL8A1P27658 AC128688.1-201ENST00000487626 519 ntBASIC17.43■□□□□ 0.38
COL8A1P27658 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.43■□□□□ 0.38
COL8A1P27658 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.43■□□□□ 0.38
COL8A1P27658 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL8A1P27658 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL8A1P27658 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
COL8A1P27658 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.42■□□□□ 0.38
COL8A1P27658 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
COL8A1P27658 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.42■□□□□ 0.38
COL8A1P27658 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.42■□□□□ 0.38
COL8A1P27658 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL8A1P27658 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.42■□□□□ 0.38
COL8A1P27658 MESTP1-201ENST00000404287 994 ntBASIC17.42■□□□□ 0.38
COL8A1P27658 TSPY5P-201ENST00000426936 936 ntBASIC17.42■□□□□ 0.38
COL8A1P27658 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.42■□□□□ 0.38
COL8A1P27658 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 YBX1P2-201ENST00000489612 999 ntBASIC17.42■□□□□ 0.38
COL8A1P27658 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.42■□□□□ 0.38
COL8A1P27658 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.42■□□□□ 0.38
COL8A1P27658 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL8A1P27658 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.42■□□□□ 0.38
COL8A1P27658 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms