Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TPM1P09493 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TPM1P09493 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TPM1P09493 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.92■■□□□ 1.1
TPM1P09493 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TPM1P09493 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
TPM1P09493 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
TPM1P09493 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TPM1P09493 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TPM1P09493 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
TPM1P09493 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
TPM1P09493 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TPM1P09493 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TPM1P09493 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
TPM1P09493 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.91■■□□□ 1.1
TPM1P09493 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.91■■□□□ 1.1
TPM1P09493 AC091799.1-201ENST00000422823 811 ntBASIC21.91■■□□□ 1.1
TPM1P09493 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.91■■□□□ 1.1
TPM1P09493 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.91■■□□□ 1.1
TPM1P09493 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.91■■□□□ 1.1
TPM1P09493 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.91■■□□□ 1.1
TPM1P09493 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.91■■□□□ 1.1
TPM1P09493 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.91■■□□□ 1.1
TPM1P09493 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TPM1P09493 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 LINC02228-203ENST00000641970 1355 ntBASIC21.9■■□□□ 1.1
TPM1P09493 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
TPM1P09493 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 PGM5P4-201ENST00000421970 445 ntBASIC21.9■■□□□ 1.1
TPM1P09493 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 SUDS3P1-201ENST00000505831 966 ntBASIC21.9■■□□□ 1.1
TPM1P09493 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.9■■□□□ 1.1
TPM1P09493 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.9■■□□□ 1.1
TPM1P09493 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.9■■□□□ 1.1
TPM1P09493 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TPM1P09493 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.9■■□□□ 1.1
TPM1P09493 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TPM1P09493 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TPM1P09493 AC020763.4-201ENST00000623414 4170 ntBASIC21.89■■□□□ 1.1
TPM1P09493 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
TPM1P09493 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TPM1P09493 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
TPM1P09493 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.89■■□□□ 1.09
TPM1P09493 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 AC027612.3-201ENST00000413684 1047 ntBASIC21.89■■□□□ 1.09
TPM1P09493 CDV3P1-201ENST00000471403 739 ntBASIC21.89■■□□□ 1.09
TPM1P09493 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.09
TPM1P09493 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
TPM1P09493 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TPM1P09493 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.89■■□□□ 1.09
TPM1P09493 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.88■■□□□ 1.09
TPM1P09493 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.88■■□□□ 1.09
TPM1P09493 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.88■■□□□ 1.09
TPM1P09493 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.88■■□□□ 1.09
TPM1P09493 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.88■■□□□ 1.09
TPM1P09493 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
TPM1P09493 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.88■■□□□ 1.09
TPM1P09493 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.88■■□□□ 1.09
TPM1P09493 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.88■■□□□ 1.09
TPM1P09493 AC142381.2-201ENST00000566120 298 ntBASIC21.88■■□□□ 1.09
TPM1P09493 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 RBM17P2-201ENST00000616397 1405 ntBASIC21.88■■□□□ 1.09
TPM1P09493 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TPM1P09493 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
TPM1P09493 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TPM1P09493 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.87■■□□□ 1.09
TPM1P09493 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.87■■□□□ 1.09
TPM1P09493 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.87■■□□□ 1.09
TPM1P09493 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.87■■□□□ 1.09
TPM1P09493 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TPM1P09493 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms