Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.08■□□□□ 0.64
SEMA3DO95025 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SEMA3DO95025 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 KRT16P6-202ENST00000425692 1426 ntBASIC19.08■□□□□ 0.64
SEMA3DO95025 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SEMA3DO95025 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.07■□□□□ 0.64
SEMA3DO95025 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 MIPEPP3-201ENST00000412105 444 ntBASIC19.07■□□□□ 0.64
SEMA3DO95025 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.07■□□□□ 0.64
SEMA3DO95025 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SEMA3DO95025 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.07■□□□□ 0.64
SEMA3DO95025 AC092666.2-201ENST00000613287 246 ntBASIC19.07■□□□□ 0.64
SEMA3DO95025 AC092118.2-201ENST00000613495 667 ntBASIC19.07■□□□□ 0.64
SEMA3DO95025 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SEMA3DO95025 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SEMA3DO95025 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.07■□□□□ 0.64
SEMA3DO95025 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.07■□□□□ 0.64
SEMA3DO95025 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.06■□□□□ 0.64
SEMA3DO95025 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SEMA3DO95025 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.06■□□□□ 0.64
SEMA3DO95025 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SEMA3DO95025 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SEMA3DO95025 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SEMA3DO95025 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.06■□□□□ 0.64
SEMA3DO95025 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.06■□□□□ 0.64
SEMA3DO95025 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.06■□□□□ 0.64
SEMA3DO95025 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
SEMA3DO95025 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.06■□□□□ 0.64
SEMA3DO95025 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.06■□□□□ 0.64
SEMA3DO95025 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SEMA3DO95025 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
SEMA3DO95025 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SEMA3DO95025 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.05■□□□□ 0.64
SEMA3DO95025 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 AL691432.2-201ENST00000607222 2038 ntBASIC19.05■□□□□ 0.64
SEMA3DO95025 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 TMEM179-206ENST00000616017 1645 ntBASIC19.05■□□□□ 0.64
SEMA3DO95025 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 GPX1P1-201ENST00000388829 606 ntBASIC19.05■□□□□ 0.64
SEMA3DO95025 SLC29A4P1-201ENST00000398760 971 ntBASIC19.05■□□□□ 0.64
SEMA3DO95025 GUSBP6-202ENST00000438529 1198 ntBASIC19.05■□□□□ 0.64
SEMA3DO95025 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.05■□□□□ 0.64
SEMA3DO95025 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.05■□□□□ 0.64
SEMA3DO95025 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.05■□□□□ 0.64
SEMA3DO95025 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SEMA3DO95025 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
SEMA3DO95025 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 TSPY6P-201ENST00000448518 926 ntBASIC19.04■□□□□ 0.64
SEMA3DO95025 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.04■□□□□ 0.64
SEMA3DO95025 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.04■□□□□ 0.64
SEMA3DO95025 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.04■□□□□ 0.64
SEMA3DO95025 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SEMA3DO95025 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms