Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
PRPF40AO75400 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
PRPF40AO75400 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
PRPF40AO75400 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.3
PRPF40AO75400 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
PRPF40AO75400 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
PRPF40AO75400 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
PRPF40AO75400 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PRPF40AO75400 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PRPF40AO75400 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
PRPF40AO75400 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.14■■□□□ 1.29
PRPF40AO75400 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
PRPF40AO75400 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.13■■□□□ 1.29
PRPF40AO75400 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC23.13■■□□□ 1.29
PRPF40AO75400 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.13■■□□□ 1.29
PRPF40AO75400 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.13■■□□□ 1.29
PRPF40AO75400 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.13■■□□□ 1.29
PRPF40AO75400 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC23.13■■□□□ 1.29
PRPF40AO75400 NEFHP1-201ENST00000412845 2629 ntBASIC23.13■■□□□ 1.29
PRPF40AO75400 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PRPF40AO75400 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.12■■□□□ 1.29
PRPF40AO75400 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.12■■□□□ 1.29
PRPF40AO75400 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PRPF40AO75400 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.12■■□□□ 1.29
PRPF40AO75400 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 TERF1P2-201ENST00000583350 1212 ntBASIC23.12■■□□□ 1.29
PRPF40AO75400 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
PRPF40AO75400 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
PRPF40AO75400 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC23.12■■□□□ 1.29
PRPF40AO75400 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC23.11■■□□□ 1.29
PRPF40AO75400 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.11■■□□□ 1.29
PRPF40AO75400 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
PRPF40AO75400 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.11■■□□□ 1.29
PRPF40AO75400 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
PRPF40AO75400 AC010141.2-201ENST00000452426 721 ntBASIC23.11■■□□□ 1.29
PRPF40AO75400 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.11■■□□□ 1.29
PRPF40AO75400 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PRPF40AO75400 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC23.1■■□□□ 1.29
PRPF40AO75400 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
PRPF40AO75400 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
PRPF40AO75400 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.1■■□□□ 1.29
PRPF40AO75400 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.1■■□□□ 1.29
PRPF40AO75400 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
PRPF40AO75400 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.1■■□□□ 1.29
PRPF40AO75400 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.1■■□□□ 1.29
PRPF40AO75400 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.1■■□□□ 1.29
PRPF40AO75400 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC23.1■■□□□ 1.29
PRPF40AO75400 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
PRPF40AO75400 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC23.1■■□□□ 1.29
PRPF40AO75400 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC23.09■■□□□ 1.29
PRPF40AO75400 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4L2-201ENST00000561772 1275 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 CCDC92B-201ENST00000575506 885 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4L6-201ENST00000626483 1275 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4L1-201ENST00000627662 1275 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4L8-201ENST00000629013 1275 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4L3-201ENST00000630187 1275 ntBASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms