Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
KDM3AQ9Y4C1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
KDM3AQ9Y4C1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
KDM3AQ9Y4C1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
KDM3AQ9Y4C1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.36■■■□□ 2.29
KDM3AQ9Y4C1 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
KDM3AQ9Y4C1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
KDM3AQ9Y4C1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.35■■■□□ 2.29
KDM3AQ9Y4C1 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
KDM3AQ9Y4C1 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
KDM3AQ9Y4C1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
KDM3AQ9Y4C1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.34■■■□□ 2.29
KDM3AQ9Y4C1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
KDM3AQ9Y4C1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
KDM3AQ9Y4C1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
KDM3AQ9Y4C1 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
KDM3AQ9Y4C1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
KDM3AQ9Y4C1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
KDM3AQ9Y4C1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
KDM3AQ9Y4C1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.31■■■□□ 2.28
KDM3AQ9Y4C1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.31■■■□□ 2.28
KDM3AQ9Y4C1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
KDM3AQ9Y4C1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
KDM3AQ9Y4C1 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
KDM3AQ9Y4C1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
KDM3AQ9Y4C1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.3■■■□□ 2.28
KDM3AQ9Y4C1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.28■■■□□ 2.28
KDM3AQ9Y4C1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
KDM3AQ9Y4C1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.28■■■□□ 2.28
KDM3AQ9Y4C1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.28■■■□□ 2.28
KDM3AQ9Y4C1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.27■■■□□ 2.28
KDM3AQ9Y4C1 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
KDM3AQ9Y4C1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
KDM3AQ9Y4C1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
KDM3AQ9Y4C1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.26■■■□□ 2.27
KDM3AQ9Y4C1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.25■■■□□ 2.27
KDM3AQ9Y4C1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.25■■■□□ 2.27
KDM3AQ9Y4C1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
KDM3AQ9Y4C1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
KDM3AQ9Y4C1 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
KDM3AQ9Y4C1 ABCB10P3-201ENST00000561950 2166 ntBASIC29.24■■■□□ 2.27
KDM3AQ9Y4C1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.23■■■□□ 2.27
KDM3AQ9Y4C1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
KDM3AQ9Y4C1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
KDM3AQ9Y4C1 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
KDM3AQ9Y4C1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
KDM3AQ9Y4C1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
KDM3AQ9Y4C1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.2■■■□□ 2.27
KDM3AQ9Y4C1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.26
KDM3AQ9Y4C1 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
KDM3AQ9Y4C1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.2■■■□□ 2.26
KDM3AQ9Y4C1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.2■■■□□ 2.26
KDM3AQ9Y4C1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
KDM3AQ9Y4C1 AC127502.1-201ENST00000399971 1502 ntBASIC29.19■■■□□ 2.26
KDM3AQ9Y4C1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
KDM3AQ9Y4C1 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
KDM3AQ9Y4C1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.17■■■□□ 2.26
KDM3AQ9Y4C1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
KDM3AQ9Y4C1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.16■■■□□ 2.26
KDM3AQ9Y4C1 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.16■■■□□ 2.26
KDM3AQ9Y4C1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
KDM3AQ9Y4C1 LINC01971-201ENST00000617888 1048 ntBASIC29.15■■■□□ 2.26
KDM3AQ9Y4C1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.14■■■□□ 2.26
KDM3AQ9Y4C1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.14■■■□□ 2.25
KDM3AQ9Y4C1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
KDM3AQ9Y4C1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
KDM3AQ9Y4C1 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
KDM3AQ9Y4C1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.13■■■□□ 2.25
KDM3AQ9Y4C1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.12■■■□□ 2.25
KDM3AQ9Y4C1 AL139393.2-201ENST00000608721 2025 ntBASIC29.12■■■□□ 2.25
KDM3AQ9Y4C1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.11■■■□□ 2.25
KDM3AQ9Y4C1 MIR639-201ENST00000384974 98 ntBASIC29.1■■■□□ 2.25
KDM3AQ9Y4C1 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
KDM3AQ9Y4C1 MIR3648-2-201ENST00000581792 180 ntBASIC29.09■■■□□ 2.25
KDM3AQ9Y4C1 DUX4L11-201ENST00000611504 1267 ntBASIC29.09■■■□□ 2.25
KDM3AQ9Y4C1 DUX4L12-201ENST00000614593 1267 ntBASIC29.09■■■□□ 2.25
KDM3AQ9Y4C1 MIR3648-1-201ENST00000615959 180 ntBASIC29.09■■■□□ 2.25
KDM3AQ9Y4C1 DUX4L14-201ENST00000621227 1267 ntBASIC29.09■■■□□ 2.25
KDM3AQ9Y4C1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.08■■■□□ 2.25
KDM3AQ9Y4C1 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.08■■■□□ 2.25
KDM3AQ9Y4C1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.08■■■□□ 2.25
KDM3AQ9Y4C1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 MIR4449-201ENST00000578365 66 ntBASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.07■■■□□ 2.24
KDM3AQ9Y4C1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
KDM3AQ9Y4C1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.06■■■□□ 2.24
KDM3AQ9Y4C1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
KDM3AQ9Y4C1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.05■■■□□ 2.24
KDM3AQ9Y4C1 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
KDM3AQ9Y4C1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
KDM3AQ9Y4C1 AC139426.1-201ENST00000568218 2529 ntBASIC29.04■■■□□ 2.24
KDM3AQ9Y4C1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.04■■■□□ 2.24
KDM3AQ9Y4C1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.04■■■□□ 2.24
KDM3AQ9Y4C1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.04■■■□□ 2.24
KDM3AQ9Y4C1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.03■■■□□ 2.24
KDM3AQ9Y4C1 AP004833.2-201ENST00000532228 1454 ntBASIC29.03■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms