Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.79■■□□□ 1.88
PCDH9Q9HC56 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
PCDH9Q9HC56 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.78■■□□□ 1.88
PCDH9Q9HC56 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.77■■□□□ 1.88
PCDH9Q9HC56 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDH9Q9HC56 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC26.76■■□□□ 1.87
PCDH9Q9HC56 AP006261.1-201ENST00000584783 668 ntBASIC26.76■■□□□ 1.87
PCDH9Q9HC56 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.76■■□□□ 1.87
PCDH9Q9HC56 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
PCDH9Q9HC56 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
PCDH9Q9HC56 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PCDH9Q9HC56 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
PCDH9Q9HC56 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PCDH9Q9HC56 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PCDH9Q9HC56 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDH9Q9HC56 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.73■■□□□ 1.87
PCDH9Q9HC56 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.73■■□□□ 1.87
PCDH9Q9HC56 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.73■■□□□ 1.87
PCDH9Q9HC56 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PCDH9Q9HC56 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDH9Q9HC56 MIR3665-201ENST00000578708 105 ntBASIC26.72■■□□□ 1.87
PCDH9Q9HC56 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PCDH9Q9HC56 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PCDH9Q9HC56 DUX4L28-201ENST00000623687 678 ntBASIC26.71■■□□□ 1.87
PCDH9Q9HC56 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PCDH9Q9HC56 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.87
PCDH9Q9HC56 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
PCDH9Q9HC56 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.7■■□□□ 1.86
PCDH9Q9HC56 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.69■■□□□ 1.86
PCDH9Q9HC56 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.69■■□□□ 1.86
PCDH9Q9HC56 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.69■■□□□ 1.86
PCDH9Q9HC56 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDH9Q9HC56 AL162393.1-201ENST00000437852 946 ntBASIC26.68■■□□□ 1.86
PCDH9Q9HC56 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.68■■□□□ 1.86
PCDH9Q9HC56 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PCDH9Q9HC56 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PCDH9Q9HC56 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDH9Q9HC56 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDH9Q9HC56 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDH9Q9HC56 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.65■■□□□ 1.86
PCDH9Q9HC56 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.65■■□□□ 1.86
PCDH9Q9HC56 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDH9Q9HC56 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDH9Q9HC56 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.64■■□□□ 1.86
PCDH9Q9HC56 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.63■■□□□ 1.85
PCDH9Q9HC56 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PCDH9Q9HC56 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PCDH9Q9HC56 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PCDH9Q9HC56 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PCDH9Q9HC56 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PCDH9Q9HC56 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
PCDH9Q9HC56 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDH9Q9HC56 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDH9Q9HC56 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PCDH9Q9HC56 AP004833.2-201ENST00000532228 1454 ntBASIC26.61■■□□□ 1.85
PCDH9Q9HC56 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDH9Q9HC56 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
PCDH9Q9HC56 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
PCDH9Q9HC56 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
PCDH9Q9HC56 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
PCDH9Q9HC56 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
PCDH9Q9HC56 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
PCDH9Q9HC56 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.58■■□□□ 1.85
PCDH9Q9HC56 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDH9Q9HC56 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
PCDH9Q9HC56 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDH9Q9HC56 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.56■■□□□ 1.84
PCDH9Q9HC56 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
PCDH9Q9HC56 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
PCDH9Q9HC56 AC087741.3-201ENST00000624270 1347 ntBASIC26.56■■□□□ 1.84
PCDH9Q9HC56 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.56■■□□□ 1.84
PCDH9Q9HC56 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDH9Q9HC56 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.55■■□□□ 1.84
PCDH9Q9HC56 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDH9Q9HC56 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDH9Q9HC56 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDH9Q9HC56 AC127502.1-201ENST00000399971 1502 ntBASIC26.53■■□□□ 1.84
PCDH9Q9HC56 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDH9Q9HC56 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.53■■□□□ 1.84
PCDH9Q9HC56 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDH9Q9HC56 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDH9Q9HC56 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PCDH9Q9HC56 RPS2P35-201ENST00000443417 897 ntBASIC26.52■■□□□ 1.84
PCDH9Q9HC56 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDH9Q9HC56 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.51■■□□□ 1.83
PCDH9Q9HC56 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
PCDH9Q9HC56 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms