Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC33.53■■■□□ 2.96
USP42Q9H9J4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
USP42Q9H9J4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
USP42Q9H9J4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
USP42Q9H9J4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC33.5■■■□□ 2.95
USP42Q9H9J4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
USP42Q9H9J4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC33.49■■■□□ 2.95
USP42Q9H9J4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
USP42Q9H9J4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
USP42Q9H9J4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC33.47■■■□□ 2.95
USP42Q9H9J4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC33.47■■■□□ 2.95
USP42Q9H9J4 ABHD17AP5-201ENST00000580133 923 ntBASIC33.46■■■□□ 2.95
USP42Q9H9J4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
USP42Q9H9J4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC33.44■■■□□ 2.94
USP42Q9H9J4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
USP42Q9H9J4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
USP42Q9H9J4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
USP42Q9H9J4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC33.42■■■□□ 2.94
USP42Q9H9J4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
USP42Q9H9J4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC33.42■■■□□ 2.94
USP42Q9H9J4 GPX1-201ENST00000419349 1106 ntBASIC33.41■■■□□ 2.94
USP42Q9H9J4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC33.4■■■□□ 2.94
USP42Q9H9J4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
USP42Q9H9J4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC33.4■■■□□ 2.94
USP42Q9H9J4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC33.39■■■□□ 2.94
USP42Q9H9J4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
USP42Q9H9J4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC33.39■■■□□ 2.94
USP42Q9H9J4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
USP42Q9H9J4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
USP42Q9H9J4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
USP42Q9H9J4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
USP42Q9H9J4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC33.36■■■□□ 2.93
USP42Q9H9J4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
USP42Q9H9J4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
USP42Q9H9J4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
USP42Q9H9J4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC33.35■■■□□ 2.93
USP42Q9H9J4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC33.35■■■□□ 2.93
USP42Q9H9J4 LINC00273-201ENST00000539813 1452 ntBASIC33.35■■■□□ 2.93
USP42Q9H9J4 RNF126P1-201ENST00000567452 1320 ntBASIC33.34■■■□□ 2.93
USP42Q9H9J4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC33.34■■■□□ 2.93
USP42Q9H9J4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
USP42Q9H9J4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC33.33■■■□□ 2.93
USP42Q9H9J4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
USP42Q9H9J4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
USP42Q9H9J4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC33.32■■■□□ 2.93
USP42Q9H9J4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC33.32■■■□□ 2.92
USP42Q9H9J4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC33.32■■■□□ 2.92
USP42Q9H9J4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC33.32■■■□□ 2.92
USP42Q9H9J4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
USP42Q9H9J4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC33.31■■■□□ 2.92
USP42Q9H9J4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
USP42Q9H9J4 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
USP42Q9H9J4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
USP42Q9H9J4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC33.3■■■□□ 2.92
USP42Q9H9J4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
USP42Q9H9J4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC33.29■■■□□ 2.92
USP42Q9H9J4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC33.29■■■□□ 2.92
USP42Q9H9J4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
USP42Q9H9J4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC33.29■■■□□ 2.92
USP42Q9H9J4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC33.28■■■□□ 2.92
USP42Q9H9J4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
USP42Q9H9J4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC33.26■■■□□ 2.92
USP42Q9H9J4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
USP42Q9H9J4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
USP42Q9H9J4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC33.25■■■□□ 2.91
USP42Q9H9J4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC33.23■■■□□ 2.91
USP42Q9H9J4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
USP42Q9H9J4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC33.22■■■□□ 2.91
USP42Q9H9J4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC33.22■■■□□ 2.91
USP42Q9H9J4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC33.21■■■□□ 2.91
USP42Q9H9J4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC33.21■■■□□ 2.91
USP42Q9H9J4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC33.2■■■□□ 2.91
USP42Q9H9J4 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC33.2■■■□□ 2.91
USP42Q9H9J4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
USP42Q9H9J4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC33.19■■■□□ 2.9
USP42Q9H9J4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
USP42Q9H9J4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
USP42Q9H9J4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
USP42Q9H9J4 AL161658.1-201ENST00000623641 1967 ntBASIC33.18■■■□□ 2.9
USP42Q9H9J4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC33.16■■■□□ 2.9
USP42Q9H9J4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
USP42Q9H9J4 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
USP42Q9H9J4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC33.14■■■□□ 2.9
USP42Q9H9J4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USP42Q9H9J4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC33.14■■■□□ 2.9
USP42Q9H9J4 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USP42Q9H9J4 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
USP42Q9H9J4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC33.13■■■□□ 2.89
USP42Q9H9J4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC33.13■■■□□ 2.89
USP42Q9H9J4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
USP42Q9H9J4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.12■■■□□ 2.89
USP42Q9H9J4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms