Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LINC00273-201ENST00000539813 1452 ntBASIC29.15■■■□□ 2.26
CCDC60Q8IWA6 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.15■■■□□ 2.26
CCDC60Q8IWA6 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 MIR3648-2-201ENST00000581792 180 ntBASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 MIR3648-1-201ENST00000615959 180 ntBASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
CCDC60Q8IWA6 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.13■■■□□ 2.25
CCDC60Q8IWA6 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
CCDC60Q8IWA6 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
CCDC60Q8IWA6 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
CCDC60Q8IWA6 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
CCDC60Q8IWA6 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
CCDC60Q8IWA6 AC016575.1-201ENST00000607026 382 ntBASIC29.11■■■□□ 2.25
CCDC60Q8IWA6 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.11■■■□□ 2.25
CCDC60Q8IWA6 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.1■■■□□ 2.25
CCDC60Q8IWA6 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
CCDC60Q8IWA6 ST7-AS1-201ENST00000456775 1889 ntBASIC29.09■■■□□ 2.25
CCDC60Q8IWA6 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.09■■■□□ 2.25
CCDC60Q8IWA6 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.08■■■□□ 2.25
CCDC60Q8IWA6 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.08■■■□□ 2.25
CCDC60Q8IWA6 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.08■■■□□ 2.25
CCDC60Q8IWA6 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CCDC60Q8IWA6 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CCDC60Q8IWA6 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
CCDC60Q8IWA6 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.07■■■□□ 2.24
CCDC60Q8IWA6 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
CCDC60Q8IWA6 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.07■■■□□ 2.24
CCDC60Q8IWA6 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L13-201ENST00000554103 1267 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L15-201ENST00000611059 1267 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L23-201ENST00000615195 1269 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L24-201ENST00000617576 1269 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L22-201ENST00000618238 1269 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L20-201ENST00000619712 1269 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L21-201ENST00000622058 1269 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L10-201ENST00000622460 1267 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 DUX4L25-201ENST00000624915 1269 ntBASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
CCDC60Q8IWA6 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
CCDC60Q8IWA6 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.05■■■□□ 2.24
CCDC60Q8IWA6 ST7-205ENST00000393446 2114 ntTSL 5 BASIC29.05■■■□□ 2.24
CCDC60Q8IWA6 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CCDC60Q8IWA6 MIR639-201ENST00000384974 98 ntBASIC29.04■■■□□ 2.24
CCDC60Q8IWA6 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CCDC60Q8IWA6 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
CCDC60Q8IWA6 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.03■■■□□ 2.24
CCDC60Q8IWA6 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.02■■■□□ 2.24
CCDC60Q8IWA6 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
CCDC60Q8IWA6 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.02■■■□□ 2.24
CCDC60Q8IWA6 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.02■■■□□ 2.24
CCDC60Q8IWA6 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.02■■■□□ 2.24
CCDC60Q8IWA6 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
CCDC60Q8IWA6 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
CCDC60Q8IWA6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.01■■■□□ 2.23
CCDC60Q8IWA6 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.01■■■□□ 2.23
CCDC60Q8IWA6 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
CCDC60Q8IWA6 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
CCDC60Q8IWA6 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29■■■□□ 2.23
CCDC60Q8IWA6 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.98■■■□□ 2.23
CCDC60Q8IWA6 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
CCDC60Q8IWA6 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
CCDC60Q8IWA6 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC28.97■■■□□ 2.23
CCDC60Q8IWA6 AC135983.2-203ENST00000454486 1613 ntBASIC28.97■■■□□ 2.23
CCDC60Q8IWA6 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.23
CCDC60Q8IWA6 WHAMMP2-203ENST00000563942 1603 ntBASIC28.96■■■□□ 2.23
CCDC60Q8IWA6 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.95■■■□□ 2.22
CCDC60Q8IWA6 MIR4449-201ENST00000578365 66 ntBASIC28.95■■■□□ 2.22
CCDC60Q8IWA6 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
CCDC60Q8IWA6 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
CCDC60Q8IWA6 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
CCDC60Q8IWA6 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
CCDC60Q8IWA6 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
CCDC60Q8IWA6 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
CCDC60Q8IWA6 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.93■■■□□ 2.22
CCDC60Q8IWA6 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
CCDC60Q8IWA6 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
CCDC60Q8IWA6 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.92■■■□□ 2.22
CCDC60Q8IWA6 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.91■■■□□ 2.22
CCDC60Q8IWA6 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.91■■■□□ 2.22
CCDC60Q8IWA6 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
CCDC60Q8IWA6 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.91■■■□□ 2.22
CCDC60Q8IWA6 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.91■■■□□ 2.22
CCDC60Q8IWA6 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
CCDC60Q8IWA6 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
CCDC60Q8IWA6 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CCDC60Q8IWA6 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.87■■■□□ 2.21
CCDC60Q8IWA6 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC28.87■■■□□ 2.21
CCDC60Q8IWA6 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.86■■■□□ 2.21
CCDC60Q8IWA6 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.86■■■□□ 2.21
CCDC60Q8IWA6 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.85■■■□□ 2.21
CCDC60Q8IWA6 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CCDC60Q8IWA6 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
CCDC60Q8IWA6 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
CCDC60Q8IWA6 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms