Protein–RNA interactions for Protein: Q7Z4I7

LIMS2, LIM and senescent cell antigen-like-containing domain protein 2, humanhuman

Predictions only

Length 341 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2Q7Z4I7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
LIMS2Q7Z4I7 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.79■■■□□ 2.04
LIMS2Q7Z4I7 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
LIMS2Q7Z4I7 LINC00273-201ENST00000539813 1452 ntBASIC27.79■■■□□ 2.04
LIMS2Q7Z4I7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
LIMS2Q7Z4I7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC27.78■■■□□ 2.04
LIMS2Q7Z4I7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
LIMS2Q7Z4I7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
LIMS2Q7Z4I7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
LIMS2Q7Z4I7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
LIMS2Q7Z4I7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC27.76■■■□□ 2.03
LIMS2Q7Z4I7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.75■■■□□ 2.03
LIMS2Q7Z4I7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.74■■■□□ 2.03
LIMS2Q7Z4I7 LINC01971-201ENST00000617888 1048 ntBASIC27.74■■■□□ 2.03
LIMS2Q7Z4I7 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
LIMS2Q7Z4I7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
LIMS2Q7Z4I7 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
LIMS2Q7Z4I7 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
LIMS2Q7Z4I7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
LIMS2Q7Z4I7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.03
LIMS2Q7Z4I7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.7■■■□□ 2.03
LIMS2Q7Z4I7 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.7■■■□□ 2.02
LIMS2Q7Z4I7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
LIMS2Q7Z4I7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
LIMS2Q7Z4I7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
LIMS2Q7Z4I7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
LIMS2Q7Z4I7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
LIMS2Q7Z4I7 AC135983.2-203ENST00000454486 1613 ntBASIC27.67■■■□□ 2.02
LIMS2Q7Z4I7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
LIMS2Q7Z4I7 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
LIMS2Q7Z4I7 DUX4L11-201ENST00000611504 1267 ntBASIC27.66■■■□□ 2.02
LIMS2Q7Z4I7 DUX4L12-201ENST00000614593 1267 ntBASIC27.66■■■□□ 2.02
LIMS2Q7Z4I7 DUX4L14-201ENST00000621227 1267 ntBASIC27.66■■■□□ 2.02
LIMS2Q7Z4I7 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
LIMS2Q7Z4I7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.65■■■□□ 2.02
LIMS2Q7Z4I7 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.64■■■□□ 2.02
LIMS2Q7Z4I7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
LIMS2Q7Z4I7 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.02
LIMS2Q7Z4I7 ABCB10P1-201ENST00000614297 2181 ntBASIC27.64■■■□□ 2.02
LIMS2Q7Z4I7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.64■■■□□ 2.02
LIMS2Q7Z4I7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.01
LIMS2Q7Z4I7 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.64■■■□□ 2.01
LIMS2Q7Z4I7 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.64■■■□□ 2.01
LIMS2Q7Z4I7 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
LIMS2Q7Z4I7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
LIMS2Q7Z4I7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.63■■■□□ 2.01
LIMS2Q7Z4I7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
LIMS2Q7Z4I7 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.62■■■□□ 2.01
LIMS2Q7Z4I7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.62■■■□□ 2.01
LIMS2Q7Z4I7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
LIMS2Q7Z4I7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
LIMS2Q7Z4I7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
LIMS2Q7Z4I7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
LIMS2Q7Z4I7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.6■■■□□ 2.01
LIMS2Q7Z4I7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
LIMS2Q7Z4I7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.6■■■□□ 2.01
LIMS2Q7Z4I7 WHAMMP2-203ENST00000563942 1603 ntBASIC27.59■■■□□ 2.01
LIMS2Q7Z4I7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
LIMS2Q7Z4I7 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
LIMS2Q7Z4I7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
LIMS2Q7Z4I7 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.58■■■□□ 2.01
LIMS2Q7Z4I7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.58■■■□□ 2.01
LIMS2Q7Z4I7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.58■■■□□ 2.01
LIMS2Q7Z4I7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
LIMS2Q7Z4I7 DUX4L13-201ENST00000554103 1267 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L15-201ENST00000611059 1267 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L23-201ENST00000615195 1269 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L24-201ENST00000617576 1269 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L22-201ENST00000618238 1269 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L20-201ENST00000619712 1269 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L21-201ENST00000622058 1269 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L10-201ENST00000622460 1267 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 DUX4L25-201ENST00000624915 1269 ntBASIC27.57■■■□□ 2
LIMS2Q7Z4I7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.57■■■□□ 2
LIMS2Q7Z4I7 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC27.57■■■□□ 2
LIMS2Q7Z4I7 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
LIMS2Q7Z4I7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
LIMS2Q7Z4I7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.56■■■□□ 2
LIMS2Q7Z4I7 AP004833.2-201ENST00000532228 1454 ntBASIC27.56■■■□□ 2
LIMS2Q7Z4I7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.55■■■□□ 2
LIMS2Q7Z4I7 MIR3648-2-201ENST00000581792 180 ntBASIC27.55■■■□□ 2
LIMS2Q7Z4I7 MIR3648-1-201ENST00000615959 180 ntBASIC27.55■■■□□ 2
LIMS2Q7Z4I7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
LIMS2Q7Z4I7 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.55■■■□□ 2
LIMS2Q7Z4I7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
LIMS2Q7Z4I7 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
LIMS2Q7Z4I7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.54■■■□□ 2
LIMS2Q7Z4I7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.54■■■□□ 2
LIMS2Q7Z4I7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.54■■■□□ 2
LIMS2Q7Z4I7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.53■■■□□ 2
LIMS2Q7Z4I7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
LIMS2Q7Z4I7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.53■■■□□ 2
LIMS2Q7Z4I7 CR559946.2-201ENST00000623684 991 ntBASIC27.53■■■□□ 2
LIMS2Q7Z4I7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
LIMS2Q7Z4I7 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
LIMS2Q7Z4I7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.52■■■□□ 2
LIMS2Q7Z4I7 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.52■■■□□ 2
LIMS2Q7Z4I7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
LIMS2Q7Z4I7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.51■■□□□ 1.99
LIMS2Q7Z4I7 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms