Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 ATG22YCL038C 1587 nt9.12□□□□□ -0.95
UBP3Q01477 YHR131CYHR131C 2553 nt9.12□□□□□ -0.95
UBP3Q01477 SPE2YOL052C 1191 nt9.12□□□□□ -0.95
UBP3Q01477 HXT10YFL011W 1641 nt9.12□□□□□ -0.95
UBP3Q01477 PAR32YDL173W 888 nt9.11□□□□□ -0.95
UBP3Q01477 IGD1YFR017C 588 nt9.11□□□□□ -0.95
UBP3Q01477 TIM44YIL022W 1296 nt9.11□□□□□ -0.95
UBP3Q01477 SEN2YLR105C 1134 nt9.11□□□□□ -0.95
UBP3Q01477 IDP3YNL009W 1263 nt9.11□□□□□ -0.95
UBP3Q01477 RIM2YBR192W 1134 nt9.11□□□□□ -0.95 RIP-Chip
UBP3Q01477 DPL1YDR294C 1770 nt9.11□□□□□ -0.95
UBP3Q01477 KDX1YKL161C 1302 nt9.1□□□□□ -0.95
UBP3Q01477 PUS5YLR165C 765 nt9.1□□□□□ -0.95
UBP3Q01477 THP3YPR045C 1413 nt9.1□□□□□ -0.95
UBP3Q01477 ARA2YMR041C 1008 nt9.09□□□□□ -0.95
UBP3Q01477 LEU2YCL018W 1095 nt9.09□□□□□ -0.95
UBP3Q01477 NAM8YHR086W 1572 nt9.08□□□□□ -0.96
UBP3Q01477 URH1YDR400W 1023 nt9.08□□□□□ -0.96 RIP-Chip
UBP3Q01477 YJL064WYJL064W 396 nt9.08□□□□□ -0.96
UBP3Q01477 RPC31YNL151C 756 nt9.08□□□□□ -0.96
UBP3Q01477 KRE1YNL322C 942 nt9.08□□□□□ -0.96
UBP3Q01477 FHN1YGR131W 525 nt9.07□□□□□ -0.96
UBP3Q01477 MDM35YKL053C-A 261 nt9.07□□□□□ -0.96
UBP3Q01477 YLR122CYLR122C 378 nt9.07□□□□□ -0.96
UBP3Q01477 snR31snR31 225 nt9.07□□□□□ -0.96
UBP3Q01477 RPN14YGL004C 1254 nt9.06□□□□□ -0.96
UBP3Q01477 KGD2YDR148C 1392 nt9.06□□□□□ -0.96
UBP3Q01477 DMA2YNL116W 1569 nt9.05□□□□□ -0.96
UBP3Q01477 LCP5YER127W 1074 nt9.05□□□□□ -0.96
UBP3Q01477 RMA1YKL132C 1293 nt9.05□□□□□ -0.96
UBP3Q01477 SAN1YDR143C 1833 nt9.04□□□□□ -0.96 RIP-Chip
UBP3Q01477 PHB2YGR231C 933 nt9.04□□□□□ -0.96
UBP3Q01477 tA(AGC)DtA(AGC)D 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)FtA(AGC)F 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)GtA(AGC)G 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)HtA(AGC)H 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)JtA(AGC)J 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)K1tA(AGC)K1 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)K2tA(AGC)K2 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)LtA(AGC)L 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)M1tA(AGC)M1 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)M2tA(AGC)M2 73 nt9.03□□□□□ -0.96
UBP3Q01477 tA(AGC)PtA(AGC)P 73 nt9.03□□□□□ -0.96
UBP3Q01477 ADH3YMR083W 1128 nt9.03□□□□□ -0.96
UBP3Q01477 PSD1YNL169C 1503 nt9.03□□□□□ -0.96
UBP3Q01477 HDA1YNL021W 2121 nt9.02□□□□□ -0.96
UBP3Q01477 KRR1YCL059C 951 nt9.01□□□□□ -0.97 RIP-Chip
UBP3Q01477 NAP1YKR048C 1254 nt9.01□□□□□ -0.97
UBP3Q01477 FSH2YMR222C 672 nt9.01□□□□□ -0.97
UBP3Q01477 PAU19YMR325W 375 nt9.01□□□□□ -0.97
UBP3Q01477 YKR012CYKR012C 378 nt9□□□□□ -0.97
UBP3Q01477 PUP1YOR157C 786 nt9□□□□□ -0.97
UBP3Q01477 SRP54YPR088C 1626 nt9□□□□□ -0.97
UBP3Q01477 MTO1YGL236C 2010 nt8.99□□□□□ -0.97 RIP-Chip
UBP3Q01477 IPL1YPL209C 1104 nt8.99□□□□□ -0.97
UBP3Q01477 REX2YLR059C 810 nt8.98□□□□□ -0.97
UBP3Q01477 FRA1YLL029W 2250 nt8.98□□□□□ -0.97
UBP3Q01477 LEU4YNL104C 1860 nt8.98□□□□□ -0.97 RIP-Chip
UBP3Q01477 YHR218WYHR218W 1812 nt8.97□□□□□ -0.97 RIP-Chip
UBP3Q01477 SDS24YBR214W 1584 nt8.97□□□□□ -0.97 RIP-Chip
UBP3Q01477 CYT1YOR065W 930 nt8.96□□□□□ -0.98
UBP3Q01477 VBA3YCL069W 1377 nt8.96□□□□□ -0.98
UBP3Q01477 FLX1YIL134W 936 nt8.95□□□□□ -0.98
UBP3Q01477 BUR6YER159C 429 nt8.94□□□□□ -0.98
UBP3Q01477 MOB1YIL106W 945 nt8.93□□□□□ -0.98
UBP3Q01477 THI3YDL080C 1830 nt8.93□□□□□ -0.98
UBP3Q01477 YKR023WYKR023W 1593 nt8.92□□□□□ -0.98
UBP3Q01477 SBP1YHL034C 885 nt8.91□□□□□ -0.98 RIP-Chip
UBP3Q01477 YOR072WYOR072W 315 nt8.91□□□□□ -0.98
UBP3Q01477 PTC6YCR079W 1329 nt8.89□□□□□ -0.99
UBP3Q01477 AGP3YFL055W 1677 nt8.89□□□□□ -0.99
UBP3Q01477 GAS1YMR307W 1680 nt8.89□□□□□ -0.99
UBP3Q01477 AI5_BETAQ0075 1065 nt8.89□□□□□ -0.99
UBP3Q01477 YMR316C-BYMR316C-B 309 nt8.89□□□□□ -0.99
UBP3Q01477 SLG1YOR008C 1137 nt8.89□□□□□ -0.99
UBP3Q01477 TPN1YGL186C 1740 nt8.88□□□□□ -0.99
UBP3Q01477 ECM27YJR106W 2178 nt8.88□□□□□ -0.99
UBP3Q01477 GPM1YKL152C 744 nt8.88□□□□□ -0.99
UBP3Q01477 tE(CUC)DtE(CUC)D 72 nt8.87□□□□□ -0.99
UBP3Q01477 tE(CUC)ItE(CUC)I 72 nt8.87□□□□□ -0.99
UBP3Q01477 YDR467CYDR467C 327 nt8.87□□□□□ -0.99
UBP3Q01477 YCR025CYCR025C 411 nt8.86□□□□□ -0.99
UBP3Q01477 GGA2YHR108W 1758 nt8.86□□□□□ -0.99
UBP3Q01477 NPP2YEL016C 1482 nt8.85□□□□□ -0.99
UBP3Q01477 ENO1YGR254W 1314 nt8.84□□□□□ -0.99
UBP3Q01477 LYS20YDL182W 1287 nt8.84□□□□□ -0.99 RIP-Chip
UBP3Q01477 YFR020WYFR020W 699 nt8.84□□□□□ -0.99
UBP3Q01477 YPT11YNL304W 1254 nt8.84□□□□□ -0.99 RIP-Chip
UBP3Q01477 TOM20YGR082W 552 nt8.83□□□□□ -1
UBP3Q01477 CYC3YAL039C 810 nt8.83□□□□□ -1
UBP3Q01477 ATG17YLR423C 1254 nt8.83□□□□□ -1 RIP-Chip
UBP3Q01477 MDL2YPL270W 2322 nt8.83□□□□□ -1
UBP3Q01477 TOM71YHR117W 1920 nt8.82□□□□□ -1
UBP3Q01477 REC114YMR133W 1287 nt8.82□□□□□ -1
UBP3Q01477 INH1YDL181W 258 nt8.81□□□□□ -1 RIP-Chip
UBP3Q01477 YLR280CYLR280C 351 nt8.81□□□□□ -1
UBP3Q01477 SER2YGR208W 930 nt8.8□□□□□ -1
UBP3Q01477 UBP13YBL067C 2244 nt8.78□□□□□ -1
UBP3Q01477 YPL277CYPL277C 1464 nt8.78□□□□□ -1
UBP3Q01477 BMT5YIL096C 1011 nt8.78□□□□□ -1
Retrieved 100 of 7,029 protein–RNA pairs in 60 ms