Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 LINC00273-201ENST00000539813 1452 ntBASIC30.54■■■□□ 2.48
HMGCS2P54868 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
HMGCS2P54868 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
HMGCS2P54868 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC30.52■■■□□ 2.48
HMGCS2P54868 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.52■■■□□ 2.48
HMGCS2P54868 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.51■■■□□ 2.48
HMGCS2P54868 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.51■■■□□ 2.48
HMGCS2P54868 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
HMGCS2P54868 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.5■■■□□ 2.47
HMGCS2P54868 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
HMGCS2P54868 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
HMGCS2P54868 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
HMGCS2P54868 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
HMGCS2P54868 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.49■■■□□ 2.47
HMGCS2P54868 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
HMGCS2P54868 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
HMGCS2P54868 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
HMGCS2P54868 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
HMGCS2P54868 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
HMGCS2P54868 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
HMGCS2P54868 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
HMGCS2P54868 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
HMGCS2P54868 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
HMGCS2P54868 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.43■■■□□ 2.46
HMGCS2P54868 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.43■■■□□ 2.46
HMGCS2P54868 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
HMGCS2P54868 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.41■■■□□ 2.46
HMGCS2P54868 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
HMGCS2P54868 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
HMGCS2P54868 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
HMGCS2P54868 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
HMGCS2P54868 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
HMGCS2P54868 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
HMGCS2P54868 RARRES2P2-201ENST00000394842 485 ntBASIC30.37■■■□□ 2.45
HMGCS2P54868 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
HMGCS2P54868 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.37■■■□□ 2.45
HMGCS2P54868 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
HMGCS2P54868 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
HMGCS2P54868 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.36■■■□□ 2.45
HMGCS2P54868 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
HMGCS2P54868 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.35■■■□□ 2.45
HMGCS2P54868 GPX1-201ENST00000419349 1106 ntBASIC30.35■■■□□ 2.45
HMGCS2P54868 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
HMGCS2P54868 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
HMGCS2P54868 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
HMGCS2P54868 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
HMGCS2P54868 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.45
HMGCS2P54868 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
HMGCS2P54868 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
HMGCS2P54868 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
HMGCS2P54868 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
HMGCS2P54868 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
HMGCS2P54868 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
HMGCS2P54868 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
HMGCS2P54868 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
HMGCS2P54868 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC30.29■■■□□ 2.44
HMGCS2P54868 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
HMGCS2P54868 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
HMGCS2P54868 AC127502.1-201ENST00000399971 1502 ntBASIC30.27■■■□□ 2.44
HMGCS2P54868 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
HMGCS2P54868 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
HMGCS2P54868 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.26■■■□□ 2.43
HMGCS2P54868 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.26■■■□□ 2.43
HMGCS2P54868 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.26■■■□□ 2.43
HMGCS2P54868 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
HMGCS2P54868 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
HMGCS2P54868 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.25■■■□□ 2.43
HMGCS2P54868 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.25■■■□□ 2.43
HMGCS2P54868 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
HMGCS2P54868 ABHD17AP5-201ENST00000580133 923 ntBASIC30.24■■■□□ 2.43
HMGCS2P54868 RNF126P1-201ENST00000567452 1320 ntBASIC30.23■■■□□ 2.43
HMGCS2P54868 WHAMMP2-203ENST00000563942 1603 ntBASIC30.22■■■□□ 2.43
HMGCS2P54868 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
HMGCS2P54868 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
HMGCS2P54868 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
HMGCS2P54868 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
HMGCS2P54868 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.2■■■□□ 2.43
HMGCS2P54868 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
HMGCS2P54868 AC135983.2-203ENST00000454486 1613 ntBASIC30.19■■■□□ 2.42
HMGCS2P54868 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
HMGCS2P54868 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
HMGCS2P54868 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
HMGCS2P54868 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.18■■■□□ 2.42
HMGCS2P54868 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.18■■■□□ 2.42
HMGCS2P54868 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.18■■■□□ 2.42
HMGCS2P54868 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
HMGCS2P54868 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.17■■■□□ 2.42
HMGCS2P54868 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
HMGCS2P54868 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
HMGCS2P54868 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
HMGCS2P54868 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.16■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms