Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC30.78■■■□□ 2.52
CTCFP49711 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CTCFP49711 KRT18P60-201ENST00000312876 1297 ntBASIC30.75■■■□□ 2.51
CTCFP49711 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CTCFP49711 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CTCFP49711 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.74■■■□□ 2.51
CTCFP49711 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CTCFP49711 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CTCFP49711 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.73■■■□□ 2.51
CTCFP49711 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CTCFP49711 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CTCFP49711 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC30.72■■■□□ 2.51
CTCFP49711 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CTCFP49711 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CTCFP49711 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CTCFP49711 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CTCFP49711 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CTCFP49711 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CTCFP49711 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CTCFP49711 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.69■■■□□ 2.5
CTCFP49711 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CTCFP49711 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
CTCFP49711 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CTCFP49711 AL451085.2-201ENST00000605085 799 ntBASIC30.66■■■□□ 2.5
CTCFP49711 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CTCFP49711 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.65■■■□□ 2.5
CTCFP49711 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CTCFP49711 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC30.64■■■□□ 2.5
CTCFP49711 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CTCFP49711 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.64■■■□□ 2.5
CTCFP49711 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
CTCFP49711 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
CTCFP49711 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.63■■■□□ 2.49
CTCFP49711 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CTCFP49711 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CTCFP49711 AC131212.1-201ENST00000613771 668 ntBASIC30.62■■■□□ 2.49
CTCFP49711 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CTCFP49711 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CTCFP49711 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CTCFP49711 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC30.6■■■□□ 2.49
CTCFP49711 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CTCFP49711 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
CTCFP49711 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.58■■■□□ 2.49
CTCFP49711 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC30.57■■■□□ 2.48
CTCFP49711 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.56■■■□□ 2.48
CTCFP49711 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC30.56■■■□□ 2.48
CTCFP49711 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.55■■■□□ 2.48
CTCFP49711 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CTCFP49711 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.54■■■□□ 2.48
CTCFP49711 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC30.54■■■□□ 2.48
CTCFP49711 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC30.54■■■□□ 2.48
CTCFP49711 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CTCFP49711 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CTCFP49711 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CTCFP49711 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC30.52■■■□□ 2.48
CTCFP49711 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.51■■■□□ 2.47
CTCFP49711 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CTCFP49711 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.51■■■□□ 2.47
CTCFP49711 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC30.5■■■□□ 2.47
CTCFP49711 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC30.5■■■□□ 2.47
CTCFP49711 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CTCFP49711 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.49■■■□□ 2.47
CTCFP49711 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.49■■■□□ 2.47
CTCFP49711 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CTCFP49711 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CTCFP49711 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC30.48■■■□□ 2.47
CTCFP49711 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CTCFP49711 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.47■■■□□ 2.47
CTCFP49711 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTCFP49711 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTCFP49711 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC30.45■■■□□ 2.47
CTCFP49711 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.44■■■□□ 2.46
CTCFP49711 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
CTCFP49711 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CTCFP49711 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CTCFP49711 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
CTCFP49711 THA1P-201ENST00000590384 1145 ntBASIC30.43■■■□□ 2.46
CTCFP49711 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC30.43■■■□□ 2.46
CTCFP49711 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.43■■■□□ 2.46
CTCFP49711 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CTCFP49711 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
CTCFP49711 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.41■■■□□ 2.46
CTCFP49711 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC30.41■■■□□ 2.46
CTCFP49711 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CTCFP49711 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CTCFP49711 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CTCFP49711 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CTCFP49711 AC060814.1-201ENST00000554326 538 ntBASIC30.4■■■□□ 2.46
CTCFP49711 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC30.39■■■□□ 2.46
CTCFP49711 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.39■■■□□ 2.46
CTCFP49711 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.45
CTCFP49711 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
CTCFP49711 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CTCFP49711 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CTCFP49711 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CTCFP49711 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC30.35■■■□□ 2.45
CTCFP49711 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CTCFP49711 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.35■■■□□ 2.45
CTCFP49711 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CTCFP49711 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms