Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 PET18YCR020C 648 nt9.23□□□□□ -0.93
SHP1P34223 MRP1YDR347W 966 nt9.23□□□□□ -0.93
SHP1P34223 SAN1YDR143C 1833 nt9.23□□□□□ -0.93
SHP1P34223 YHR219WYHR219W 1875 nt9.22□□□□□ -0.93
SHP1P34223 EDC2YER035W 438 nt9.21□□□□□ -0.94
SHP1P34223 SPT20YOL148C 1815 nt9.2□□□□□ -0.94
SHP1P34223 snR31snR31 225 nt9.2□□□□□ -0.94
SHP1P34223 MFG1YDL233W 1377 nt9.19□□□□□ -0.94
SHP1P34223 tL(UAA)B1tL(UAA)B1 84 nt9.18□□□□□ -0.94
SHP1P34223 tL(UAA)B2tL(UAA)B2 84 nt9.18□□□□□ -0.94
SHP1P34223 tL(UAA)DtL(UAA)D 84 nt9.18□□□□□ -0.94
SHP1P34223 SUP51tL(UAA)J 84 nt9.18□□□□□ -0.94
SHP1P34223 tL(UAA)KtL(UAA)K 84 nt9.18□□□□□ -0.94
SHP1P34223 tL(UAA)LtL(UAA)L 84 nt9.18□□□□□ -0.94
SHP1P34223 tL(UAA)NtL(UAA)N 84 nt9.18□□□□□ -0.94
SHP1P34223 MUP1YGR055W 1725 nt9.18□□□□□ -0.94
SHP1P34223 GID8YMR135C 1368 nt9.18□□□□□ -0.94
SHP1P34223 LSR1LSR1 1175 nt9.18□□□□□ -0.94
SHP1P34223 ZAP1YJL056C 2643 nt9.16□□□□□ -0.94
SHP1P34223 UTR5YEL035C 501 nt9.16□□□□□ -0.94
SHP1P34223 KAE1YKR038C 1161 nt9.16□□□□□ -0.94
SHP1P34223 LSP1YPL004C 1026 nt9.16□□□□□ -0.94
SHP1P34223 VMA11YPL234C 495 nt9.16□□□□□ -0.94
SHP1P34223 MRS6YOR370C 1812 nt9.16□□□□□ -0.94
SHP1P34223 ADA2YDR448W 1305 nt9.15□□□□□ -0.94
SHP1P34223 YMR166CYMR166C 1107 nt9.15□□□□□ -0.94
SHP1P34223 YPT11YNL304W 1254 nt9.15□□□□□ -0.94
SHP1P34223 KGD2YDR148C 1392 nt9.14□□□□□ -0.95
SHP1P34223 GDH1YOR375C 1365 nt9.14□□□□□ -0.95
SHP1P34223 KES1YPL145C 1305 nt9.14□□□□□ -0.95
SHP1P34223 CMP2YML057W 1815 nt9.13□□□□□ -0.95
SHP1P34223 RPN14YGL004C 1254 nt9.13□□□□□ -0.95
SHP1P34223 RIM2YBR192W 1134 nt9.13□□□□□ -0.95
SHP1P34223 COQ8YGL119W 1506 nt9.12□□□□□ -0.95
SHP1P34223 HOL1YNR055C 1761 nt9.12□□□□□ -0.95
SHP1P34223 YKL133CYKL133C 1392 nt9.11□□□□□ -0.95
SHP1P34223 SGA1YIL099W 1650 nt9.1□□□□□ -0.95
SHP1P34223 YJR149WYJR149W 1215 nt9.1□□□□□ -0.95
SHP1P34223 YMR206WYMR206W 942 nt9.1□□□□□ -0.95
SHP1P34223 SNX3YOR357C 489 nt9.1□□□□□ -0.95
SHP1P34223 HSL7YBR133C 2484 nt9.09□□□□□ -0.95
SHP1P34223 GAS1YMR307W 1680 nt9.08□□□□□ -0.96
SHP1P34223 YER156CYER156C 1017 nt9.08□□□□□ -0.96
SHP1P34223 PTC6YCR079W 1329 nt9.07□□□□□ -0.96
SHP1P34223 TAD2YJL035C 753 nt9.07□□□□□ -0.96
SHP1P34223 ELP4YPL101W 1371 nt9.07□□□□□ -0.96
SHP1P34223 RSM7YJR113C 744 nt9.05□□□□□ -0.96
SHP1P34223 HEL2YDR266C 1920 nt9.05□□□□□ -0.96
SHP1P34223 CAK1YFL029C 1107 nt9.04□□□□□ -0.96
SHP1P34223 RRT14YIL127C 621 nt9.04□□□□□ -0.96
SHP1P34223 MFT1YML062C 1179 nt9.04□□□□□ -0.96
SHP1P34223 SBP1YHL034C 885 nt9.03□□□□□ -0.96
SHP1P34223 RPD3YNL330C 1302 nt9.03□□□□□ -0.96
SHP1P34223 OCH1YGL038C 1443 nt9.02□□□□□ -0.97
SHP1P34223 ADE1YAR015W 921 nt9.01□□□□□ -0.97
SHP1P34223 HOG1YLR113W 1308 nt9.01□□□□□ -0.97
SHP1P34223 TOS1YBR162C 1368 nt9□□□□□ -0.97
SHP1P34223 MET22YOL064C 1074 nt9□□□□□ -0.97
SHP1P34223 BXI1YNL305C 894 nt8.99□□□□□ -0.97
SHP1P34223 RPS6AYPL090C 711 nt8.99□□□□□ -0.97
SHP1P34223 RPS6BYBR181C 711 nt8.99□□□□□ -0.97
SHP1P34223 BAP3YDR046C 1815 nt8.98□□□□□ -0.97
SHP1P34223 SSL2YIL143C 2532 nt8.97□□□□□ -0.97
SHP1P34223 PDC6YGR087C 1692 nt8.96□□□□□ -0.98
SHP1P34223 UGP1YKL035W 1500 nt8.95□□□□□ -0.98
SHP1P34223 RNA170RNA170 169 nt8.95□□□□□ -0.98
SHP1P34223 DPL1YDR294C 1770 nt8.94□□□□□ -0.98
SHP1P34223 YLR460CYLR460C 1131 nt8.94□□□□□ -0.98
SHP1P34223 YPL247CYPL247C 1572 nt8.94□□□□□ -0.98
SHP1P34223 YJL043WYJL043W 774 nt8.93□□□□□ -0.98
SHP1P34223 CWP2YKL096W-A 279 nt8.93□□□□□ -0.98
SHP1P34223 FUS3YBL016W 1062 nt8.93□□□□□ -0.98
SHP1P34223 MET2YNL277W 1461 nt8.93□□□□□ -0.98
SHP1P34223 THI3YDL080C 1830 nt8.93□□□□□ -0.98
SHP1P34223 ATP2YJR121W 1536 nt8.92□□□□□ -0.98
SHP1P34223 CHS7YHR142W 951 nt8.92□□□□□ -0.98
SHP1P34223 YMR316C-BYMR316C-B 309 nt8.92□□□□□ -0.98
SHP1P34223 RPC31YNL151C 756 nt8.92□□□□□ -0.98
SHP1P34223 PRE5YMR314W 705 nt8.91□□□□□ -0.98
SHP1P34223 PET494YNR045W 1470 nt8.9□□□□□ -0.98
SHP1P34223 TDH1YJL052W 999 nt8.89□□□□□ -0.99
SHP1P34223 NUP53YMR153W 1428 nt8.88□□□□□ -0.99
SHP1P34223 YPR084WYPR084W 1371 nt8.88□□□□□ -0.99
SHP1P34223 KRR1YCL059C 951 nt8.88□□□□□ -0.99
SHP1P34223 GGA2YHR108W 1758 nt8.86□□□□□ -0.99
SHP1P34223 ODC1YPL134C 933 nt8.85□□□□□ -0.99
SHP1P34223 SDH8YBR269C 417 nt8.85□□□□□ -0.99
SHP1P34223 YIL168WYIL168W 384 nt8.83□□□□□ -1
SHP1P34223 OLA1YBR025C 1185 nt8.83□□□□□ -1
SHP1P34223 SFP1YLR403W 2052 nt8.82□□□□□ -1
SHP1P34223 HIS2YFR025C 1008 nt8.82□□□□□ -1
SHP1P34223 GPM1YKL152C 744 nt8.8□□□□□ -1
SHP1P34223 RHO1YPR165W 630 nt8.79□□□□□ -1
SHP1P34223 SHC1YER096W 1539 nt8.79□□□□□ -1
SHP1P34223 YPT31YER031C 672 nt8.77□□□□□ -1.01
SHP1P34223 YIR035CYIR035C 765 nt8.77□□□□□ -1.01
SHP1P34223 AAC3YBR085W 924 nt8.77□□□□□ -1.01
SHP1P34223 RRT6YGL146C 936 nt8.76□□□□□ -1.01
SHP1P34223 LEU4YNL104C 1860 nt8.76□□□□□ -1.01
SHP1P34223 TMS1YDR105C 1422 nt8.75□□□□□ -1.01
Retrieved 100 of 7,029 protein–RNA pairs in 37.6 ms