Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL1A1P02452 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.79■■■□□ 2.68
COL1A1P02452 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL1A1P02452 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
COL1A1P02452 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.77■■■□□ 2.68
COL1A1P02452 LINC00273-201ENST00000539813 1452 ntBASIC31.76■■■□□ 2.68
COL1A1P02452 AL135925.1-201ENST00000605920 1701 ntBASIC31.76■■■□□ 2.67
COL1A1P02452 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL1A1P02452 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
COL1A1P02452 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.75■■■□□ 2.67
COL1A1P02452 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL1A1P02452 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.74■■■□□ 2.67
COL1A1P02452 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.74■■■□□ 2.67
COL1A1P02452 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL1A1P02452 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
COL1A1P02452 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL1A1P02452 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.72■■■□□ 2.67
COL1A1P02452 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL1A1P02452 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L13-201ENST00000554103 1267 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L15-201ENST00000611059 1267 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L23-201ENST00000615195 1269 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L24-201ENST00000617576 1269 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L22-201ENST00000618238 1269 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L20-201ENST00000619712 1269 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L21-201ENST00000622058 1269 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L10-201ENST00000622460 1267 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 DUX4L25-201ENST00000624915 1269 ntBASIC31.72■■■□□ 2.67
COL1A1P02452 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL1A1P02452 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL1A1P02452 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL1A1P02452 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
COL1A1P02452 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.69■■■□□ 2.66
COL1A1P02452 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.69■■■□□ 2.66
COL1A1P02452 AC127502.1-201ENST00000399971 1502 ntBASIC31.68■■■□□ 2.66
COL1A1P02452 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
COL1A1P02452 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.67■■■□□ 2.66
COL1A1P02452 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL1A1P02452 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
COL1A1P02452 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.65■■■□□ 2.66
COL1A1P02452 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL1A1P02452 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL1A1P02452 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.63■■■□□ 2.65
COL1A1P02452 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL1A1P02452 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL1A1P02452 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.62■■■□□ 2.65
COL1A1P02452 METRNL-202ENST00000570778 967 ntTSL 5 BASIC31.61■■■□□ 2.65
COL1A1P02452 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.61■■■□□ 2.65
COL1A1P02452 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
COL1A1P02452 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.6■■■□□ 2.65
COL1A1P02452 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL1A1P02452 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.6■■■□□ 2.65
COL1A1P02452 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.59■■■□□ 2.65
COL1A1P02452 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL1A1P02452 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL1A1P02452 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
COL1A1P02452 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.58■■■□□ 2.65
COL1A1P02452 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL1A1P02452 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.56■■■□□ 2.64
COL1A1P02452 WHAMMP2-203ENST00000563942 1603 ntBASIC31.55■■■□□ 2.64
COL1A1P02452 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.55■■■□□ 2.64
COL1A1P02452 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
COL1A1P02452 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL1A1P02452 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
COL1A1P02452 AC135983.2-203ENST00000454486 1613 ntBASIC31.53■■■□□ 2.64
COL1A1P02452 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL1A1P02452 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.53■■■□□ 2.64
COL1A1P02452 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
COL1A1P02452 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
COL1A1P02452 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL1A1P02452 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
COL1A1P02452 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL1A1P02452 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.5■■■□□ 2.63
COL1A1P02452 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.5■■■□□ 2.63
COL1A1P02452 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL1A1P02452 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.49■■■□□ 2.63
COL1A1P02452 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.49■■■□□ 2.63
COL1A1P02452 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.48■■■□□ 2.63
COL1A1P02452 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
COL1A1P02452 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL1A1P02452 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL1A1P02452 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.46■■■□□ 2.63
COL1A1P02452 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
COL1A1P02452 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.46■■■□□ 2.63
COL1A1P02452 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL1A1P02452 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
COL1A1P02452 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL1A1P02452 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
COL1A1P02452 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL1A1P02452 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.45■■■□□ 2.63
COL1A1P02452 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
COL1A1P02452 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms