Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
PDGFBP01127 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.87■■□□□ 1.89
PDGFBP01127 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
PDGFBP01127 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.85■■□□□ 1.89
PDGFBP01127 U85056.1-201ENST00000616429 682 ntBASIC26.85■■□□□ 1.89
PDGFBP01127 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.85■■□□□ 1.89
PDGFBP01127 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PDGFBP01127 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PDGFBP01127 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
PDGFBP01127 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PDGFBP01127 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.84■■□□□ 1.89
PDGFBP01127 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PDGFBP01127 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
PDGFBP01127 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
PDGFBP01127 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PDGFBP01127 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.82■■□□□ 1.88
PDGFBP01127 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.81■■□□□ 1.88
PDGFBP01127 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.8■■□□□ 1.88
PDGFBP01127 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
PDGFBP01127 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
PDGFBP01127 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.79■■□□□ 1.88
PDGFBP01127 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.79■■□□□ 1.88
PDGFBP01127 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
PDGFBP01127 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
PDGFBP01127 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PDGFBP01127 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.77■■□□□ 1.88
PDGFBP01127 RARRES2P1-201ENST00000474487 481 ntBASIC26.77■■□□□ 1.88
PDGFBP01127 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.76■■□□□ 1.87
PDGFBP01127 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
PDGFBP01127 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.75■■□□□ 1.87
PDGFBP01127 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.75■■□□□ 1.87
PDGFBP01127 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PDGFBP01127 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.75■■□□□ 1.87
PDGFBP01127 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
PDGFBP01127 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PDGFBP01127 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PDGFBP01127 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PDGFBP01127 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PDGFBP01127 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
PDGFBP01127 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PDGFBP01127 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.72■■□□□ 1.87
PDGFBP01127 LINC00273-201ENST00000539813 1452 ntBASIC26.7■■□□□ 1.87
PDGFBP01127 AC004987.1-201ENST00000428627 508 ntBASIC26.7■■□□□ 1.86
PDGFBP01127 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PDGFBP01127 TSPY13P-201ENST00000338964 914 ntBASIC26.69■■□□□ 1.86
PDGFBP01127 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.69■■□□□ 1.86
PDGFBP01127 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
PDGFBP01127 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
PDGFBP01127 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.68■■□□□ 1.86
PDGFBP01127 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PDGFBP01127 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.66■■□□□ 1.86
PDGFBP01127 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.66■■□□□ 1.86
PDGFBP01127 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
PDGFBP01127 KRT18P60-201ENST00000312876 1297 ntBASIC26.65■■□□□ 1.86
PDGFBP01127 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
PDGFBP01127 ATP5G2P3-201ENST00000429083 425 ntBASIC26.65■■□□□ 1.86
PDGFBP01127 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PDGFBP01127 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.64■■□□□ 1.86
PDGFBP01127 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
PDGFBP01127 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.63■■□□□ 1.85
PDGFBP01127 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.63■■□□□ 1.85
PDGFBP01127 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.63■■□□□ 1.85
PDGFBP01127 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
PDGFBP01127 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PDGFBP01127 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
PDGFBP01127 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.6■■□□□ 1.85
PDGFBP01127 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.6■■□□□ 1.85
PDGFBP01127 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC26.59■■□□□ 1.85
PDGFBP01127 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
PDGFBP01127 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
PDGFBP01127 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
PDGFBP01127 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.58■■□□□ 1.85
PDGFBP01127 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
PDGFBP01127 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
PDGFBP01127 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.58■■□□□ 1.85
PDGFBP01127 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
PDGFBP01127 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PDGFBP01127 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.57■■□□□ 1.84
PDGFBP01127 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
PDGFBP01127 AC060814.1-201ENST00000554326 538 ntBASIC26.56■■□□□ 1.84
PDGFBP01127 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.56■■□□□ 1.84
PDGFBP01127 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
PDGFBP01127 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
PDGFBP01127 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PDGFBP01127 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
PDGFBP01127 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.54■■□□□ 1.84
PDGFBP01127 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PDGFBP01127 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.53■■□□□ 1.84
PDGFBP01127 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PDGFBP01127 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.52■■□□□ 1.84
PDGFBP01127 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.52■■□□□ 1.84
PDGFBP01127 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
PDGFBP01127 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PDGFBP01127 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
PDGFBP01127 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.5■■□□□ 1.83
PDGFBP01127 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PDGFBP01127 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
PDGFBP01127 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PDGFBP01127 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PDGFBP01127 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms