Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MBD4O95243 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
MBD4O95243 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
MBD4O95243 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
MBD4O95243 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.23■■■□□ 2.59
MBD4O95243 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.22■■■□□ 2.59
MBD4O95243 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.2■■■□□ 2.59
MBD4O95243 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
MBD4O95243 LINC01971-201ENST00000617888 1048 ntBASIC31.18■■■□□ 2.58
MBD4O95243 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
MBD4O95243 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.17■■■□□ 2.58
MBD4O95243 LINC00273-201ENST00000539813 1452 ntBASIC31.17■■■□□ 2.58
MBD4O95243 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.17■■■□□ 2.58
MBD4O95243 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.17■■■□□ 2.58
MBD4O95243 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.17■■■□□ 2.58
MBD4O95243 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
MBD4O95243 ABCB10P1-201ENST00000614297 2181 ntBASIC31.15■■■□□ 2.58
MBD4O95243 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.15■■■□□ 2.58
MBD4O95243 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
MBD4O95243 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
MBD4O95243 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.13■■■□□ 2.57
MBD4O95243 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MBD4O95243 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MBD4O95243 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
MBD4O95243 DUX4L11-201ENST00000611504 1267 ntBASIC31.12■■■□□ 2.57
MBD4O95243 DUX4L12-201ENST00000614593 1267 ntBASIC31.12■■■□□ 2.57
MBD4O95243 DUX4L14-201ENST00000621227 1267 ntBASIC31.12■■■□□ 2.57
MBD4O95243 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
MBD4O95243 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MBD4O95243 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MBD4O95243 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.11■■■□□ 2.57
MBD4O95243 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.11■■■□□ 2.57
MBD4O95243 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
MBD4O95243 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
MBD4O95243 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
MBD4O95243 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
MBD4O95243 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.08■■■□□ 2.57
MBD4O95243 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MBD4O95243 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MBD4O95243 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MBD4O95243 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
MBD4O95243 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
MBD4O95243 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
MBD4O95243 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.05■■■□□ 2.56
MBD4O95243 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
MBD4O95243 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
MBD4O95243 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.03■■■□□ 2.56
MBD4O95243 AC135983.2-203ENST00000454486 1613 ntBASIC31.02■■■□□ 2.56
MBD4O95243 WHAMMP2-203ENST00000563942 1603 ntBASIC31.02■■■□□ 2.56
MBD4O95243 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.02■■■□□ 2.56
MBD4O95243 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.02■■■□□ 2.56
MBD4O95243 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.02■■■□□ 2.56
MBD4O95243 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.02■■■□□ 2.56
MBD4O95243 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
MBD4O95243 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.01■■■□□ 2.56
MBD4O95243 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.01■■■□□ 2.56
MBD4O95243 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
MBD4O95243 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.01■■■□□ 2.55
MBD4O95243 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.01■■■□□ 2.55
MBD4O95243 CR559946.2-201ENST00000623684 991 ntBASIC31.01■■■□□ 2.55
MBD4O95243 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
MBD4O95243 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31■■■□□ 2.55
MBD4O95243 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
MBD4O95243 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31■■■□□ 2.55
MBD4O95243 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31■■■□□ 2.55
MBD4O95243 HLA-V-202ENST00000446817 847 ntBASIC30.99■■■□□ 2.55
MBD4O95243 MIR3648-2-201ENST00000581792 180 ntBASIC30.99■■■□□ 2.55
MBD4O95243 MIR3648-1-201ENST00000615959 180 ntBASIC30.99■■■□□ 2.55
MBD4O95243 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
MBD4O95243 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
MBD4O95243 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
MBD4O95243 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.98■■■□□ 2.55
MBD4O95243 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
MBD4O95243 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
MBD4O95243 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MBD4O95243 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L13-201ENST00000554103 1267 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L15-201ENST00000611059 1267 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L23-201ENST00000615195 1269 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L24-201ENST00000617576 1269 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L22-201ENST00000618238 1269 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L20-201ENST00000619712 1269 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L21-201ENST00000622058 1269 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L10-201ENST00000622460 1267 ntBASIC30.97■■■□□ 2.55
MBD4O95243 DUX4L25-201ENST00000624915 1269 ntBASIC30.97■■■□□ 2.55
MBD4O95243 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.97■■■□□ 2.55
MBD4O95243 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MBD4O95243 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MBD4O95243 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MBD4O95243 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
MBD4O95243 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MBD4O95243 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.96■■■□□ 2.55
MBD4O95243 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.95■■■□□ 2.55
MBD4O95243 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.95■■■□□ 2.55
MBD4O95243 AC016575.1-201ENST00000607026 382 ntBASIC30.95■■■□□ 2.55
MBD4O95243 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
MBD4O95243 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
MBD4O95243 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
MBD4O95243 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.93■■■□□ 2.54
MBD4O95243 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms