Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 DUX4L12-201ENST00000614593 1267 ntBASIC27.36■■□□□ 1.97
RTN3O95197 DUX4L14-201ENST00000621227 1267 ntBASIC27.36■■□□□ 1.97
RTN3O95197 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTN3O95197 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RTN3O95197 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.35■■□□□ 1.97
RTN3O95197 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.35■■□□□ 1.97
RTN3O95197 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.35■■□□□ 1.97
RTN3O95197 LINC00273-201ENST00000539813 1452 ntBASIC27.34■■□□□ 1.97
RTN3O95197 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTN3O95197 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RTN3O95197 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTN3O95197 HLA-V-202ENST00000446817 847 ntBASIC27.33■■□□□ 1.97
RTN3O95197 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.33■■□□□ 1.97
RTN3O95197 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.33■■□□□ 1.97
RTN3O95197 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
RTN3O95197 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RTN3O95197 AC127502.1-201ENST00000399971 1502 ntBASIC27.32■■□□□ 1.96
RTN3O95197 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.32■■□□□ 1.96
RTN3O95197 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.32■■□□□ 1.96
RTN3O95197 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC27.32■■□□□ 1.96
RTN3O95197 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
RTN3O95197 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.31■■□□□ 1.96
RTN3O95197 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.31■■□□□ 1.96
RTN3O95197 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.3■■□□□ 1.96
RTN3O95197 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.3■■□□□ 1.96
RTN3O95197 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.3■■□□□ 1.96
RTN3O95197 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.3■■□□□ 1.96
RTN3O95197 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RTN3O95197 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.29■■□□□ 1.96
RTN3O95197 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.29■■□□□ 1.96
RTN3O95197 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
RTN3O95197 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
RTN3O95197 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.28■■□□□ 1.96
RTN3O95197 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RTN3O95197 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RTN3O95197 MIR3648-2-201ENST00000581792 180 ntBASIC27.26■■□□□ 1.95
RTN3O95197 MIR3648-1-201ENST00000615959 180 ntBASIC27.26■■□□□ 1.95
RTN3O95197 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTN3O95197 ST7-AS1-201ENST00000456775 1889 ntBASIC27.25■■□□□ 1.95
RTN3O95197 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
RTN3O95197 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTN3O95197 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.25■■□□□ 1.95
RTN3O95197 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.25■■□□□ 1.95
RTN3O95197 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L13-201ENST00000554103 1267 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L15-201ENST00000611059 1267 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L23-201ENST00000615195 1269 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L24-201ENST00000617576 1269 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L22-201ENST00000618238 1269 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L20-201ENST00000619712 1269 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L21-201ENST00000622058 1269 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L10-201ENST00000622460 1267 ntBASIC27.24■■□□□ 1.95
RTN3O95197 DUX4L25-201ENST00000624915 1269 ntBASIC27.24■■□□□ 1.95
RTN3O95197 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
RTN3O95197 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
RTN3O95197 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
RTN3O95197 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
RTN3O95197 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.23■■□□□ 1.95
RTN3O95197 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.22■■□□□ 1.95
RTN3O95197 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTN3O95197 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTN3O95197 CR559946.2-201ENST00000623684 991 ntBASIC27.21■■□□□ 1.95
RTN3O95197 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
RTN3O95197 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
RTN3O95197 AC016575.1-201ENST00000607026 382 ntBASIC27.2■■□□□ 1.94
RTN3O95197 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.2■■□□□ 1.94
RTN3O95197 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RTN3O95197 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RTN3O95197 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RTN3O95197 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
RTN3O95197 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
RTN3O95197 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
RTN3O95197 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTN3O95197 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTN3O95197 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTN3O95197 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTN3O95197 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTN3O95197 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTN3O95197 MIR639-201ENST00000384974 98 ntBASIC27.17■■□□□ 1.94
RTN3O95197 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.17■■□□□ 1.94
RTN3O95197 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTN3O95197 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTN3O95197 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RTN3O95197 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RTN3O95197 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.16■■□□□ 1.94
RTN3O95197 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
RTN3O95197 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTN3O95197 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTN3O95197 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.15■■□□□ 1.94
RTN3O95197 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTN3O95197 AC135983.2-203ENST00000454486 1613 ntBASIC27.15■■□□□ 1.94
RTN3O95197 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RTN3O95197 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.13■■□□□ 1.93
RTN3O95197 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
RTN3O95197 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTN3O95197 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTN3O95197 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RTN3O95197 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.1■■□□□ 1.93
RTN3O95197 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
RTN3O95197 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms