Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.87■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC34.87■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC34.84■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC34.84■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC34.83■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC34.81■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.81■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC34.81■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 AC044849.2-201ENST00000606596 710 ntBASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 DUX4L28-201ENST00000623687 678 ntBASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC34.76■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 AC005559.1-201ENST00000589661 871 ntBASIC34.76■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC34.76■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.75■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 AL139393.2-201ENST00000608721 2025 ntBASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC34.73■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC34.73■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC34.71■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.71■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC34.7■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC34.7■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC34.65■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.64■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.64■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC34.64■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.61■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 AC127502.1-201ENST00000399971 1502 ntBASIC34.59■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MIR639-201ENST00000384974 98 ntBASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MIR6090-201ENST00000622481 60 ntBASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC34.56■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC34.52■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC34.52■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC34.46■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms