Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 OR2M1P-201ENST00000318104 951 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 U3.14-201ENST00000365363 227 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AL713922.1-201ENST00000416477 747 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 EIF4A1P2-201ENST00000422633 1220 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC114402.2-201ENST00000432760 643 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 PHB2P1-201ENST00000434943 890 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 RPL5P15-201ENST00000475870 897 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC063943.2-201ENST00000495697 534 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC096754.1-201ENST00000508904 818 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 SSU72P6-201ENST00000532644 488 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 MED31-202ENST00000574128 619 ntTSL 3 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 MIR5095-201ENST00000578844 88 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC011193.2-201ENST00000582638 367 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 EXOSC3P2-201ENST00000594464 497 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC008626.2-201ENST00000624425 248 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC073263.3-201ENST00000624449 858 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 FKBP1AP4-201ENST00000631775 336 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 AC241584.2-201ENST00000637142 2090 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 TMEM75-201ENST00000624314 2165 ntBASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC6.3□□□□□ -1.4
RSPO3Q9BXY4 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 SNORA11D-201ENST00000408548 128 ntBASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 SNORA11E-201ENST00000408778 128 ntBASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 RN7SKP137-201ENST00000411074 307 ntBASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 ATP5LP4-201ENST00000434169 307 ntBASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 AC011742.2-201ENST00000443818 352 ntBASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 RPL23AP28-201ENST00000448062 470 ntBASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC6.29□□□□□ -1.4
RSPO3Q9BXY4 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms