Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC11.22□□□□□ -0.61
CUX1P39880 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC11.22□□□□□ -0.61
CUX1P39880 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 FAM13A-218ENST00000511976 3579 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
CUX1P39880 AL391987.1-201ENST00000441025 200 ntBASIC11.22□□□□□ -0.61
CUX1P39880 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC11.22□□□□□ -0.61
CUX1P39880 CYCSP25-201ENST00000525280 316 ntBASIC11.22□□□□□ -0.61
CUX1P39880 AL596275.2-203ENST00000641951 371 ntBASIC11.22□□□□□ -0.61
CUX1P39880 HCG18-244ENST00000602516 2890 ntBASIC11.22□□□□□ -0.61
CUX1P39880 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC11.22□□□□□ -0.61
CUX1P39880 FAM107A-201ENST00000360997 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC11.22□□□□□ -0.61
CUX1P39880 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 ADGRE3-201ENST00000253673 2254 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CUX1P39880 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC11.22□□□□□ -0.61
CUX1P39880 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC11.22□□□□□ -0.61
CUX1P39880 AC107398.3-201ENST00000562284 7000 ntBASIC11.22□□□□□ -0.61
CUX1P39880 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 CD28-201ENST00000324106 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC11.21□□□□□ -0.61
CUX1P39880 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 MLYCD-201ENST00000262430 13038 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 TNFSF15-202ENST00000374045 6687 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC11.21□□□□□ -0.61
CUX1P39880 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC11.21□□□□□ -0.61
CUX1P39880 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC11.21□□□□□ -0.61
CUX1P39880 AC068228.1-201ENST00000461723 211 ntBASIC11.21□□□□□ -0.61
CUX1P39880 RPL23AP64-201ENST00000469465 435 ntBASIC11.21□□□□□ -0.61
CUX1P39880 RPS14P8-201ENST00000478778 369 ntBASIC11.21□□□□□ -0.61
CUX1P39880 RPL5P14-201ENST00000494197 878 ntBASIC11.21□□□□□ -0.61
CUX1P39880 RN7SL475P-201ENST00000583379 298 ntBASIC11.21□□□□□ -0.61
CUX1P39880 AL138895.2-201ENST00000603019 178 ntBASIC11.21□□□□□ -0.61
CUX1P39880 AP001437.1-201ENST00000608783 456 ntBASIC11.21□□□□□ -0.61
CUX1P39880 AL096712.1-201ENST00000614561 159 ntBASIC11.21□□□□□ -0.61
CUX1P39880 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.61
CUX1P39880 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 SLC22A9-201ENST00000279178 2343 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CUX1P39880 COX10-AS1-201ENST00000423323 3000 ntTSL 2 BASIC11.21□□□□□ -0.61
CUX1P39880 USP46-202ENST00000451218 4622 ntTSL 5 BASIC11.21□□□□□ -0.62
CUX1P39880 ESR1-206ENST00000427531 5436 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CUX1P39880 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
CUX1P39880 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CUX1P39880 SLC30A9-201ENST00000264451 6218 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CUX1P39880 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC11.2□□□□□ -0.62
CUX1P39880 AC011592.1-201ENST00000624647 3634 ntBASIC11.2□□□□□ -0.62
CUX1P39880 COL4A6-201ENST00000334504 6700 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CUX1P39880 RPL12P13-201ENST00000310055 497 ntBASIC11.2□□□□□ -0.62
CUX1P39880 CHEK2P5-201ENST00000423877 246 ntBASIC11.2□□□□□ -0.62
CUX1P39880 OR2L9P-201ENST00000444456 913 ntBASIC11.2□□□□□ -0.62
CUX1P39880 RBMY3AP-201ENST00000449381 1145 ntBASIC11.2□□□□□ -0.62
CUX1P39880 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC11.2□□□□□ -0.62
CUX1P39880 AC008429.2-201ENST00000523057 864 ntBASIC11.2□□□□□ -0.62
CUX1P39880 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC11.2□□□□□ -0.62
CUX1P39880 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC11.2□□□□□ -0.62
CUX1P39880 SNORA70D-201ENST00000578836 135 ntBASIC11.2□□□□□ -0.62
CUX1P39880 AL136097.3-201ENST00000611097 505 ntBASIC11.2□□□□□ -0.62
CUX1P39880 AP001264.1-201ENST00000620602 703 ntBASIC11.2□□□□□ -0.62
CUX1P39880 SAMMSON-214ENST00000641395 1264 ntBASIC11.2□□□□□ -0.62
CUX1P39880 ERBB3-203ENST00000415288 4353 ntTSL 2 BASIC11.2□□□□□ -0.62
CUX1P39880 CTDSPL-201ENST00000273179 4459 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC11.2□□□□□ -0.62
CUX1P39880 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 PSD3-203ENST00000428502 6330 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 EFNA5-201ENST00000333274 5335 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC11.2□□□□□ -0.62
CUX1P39880 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CUX1P39880 TNIK-211ENST00000475336 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC11.2□□□□□ -0.62
CUX1P39880 ADGRE2-201ENST00000315576 6767 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CUX1P39880 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CUX1P39880 AL139805.1-201ENST00000407837 289 ntBASIC11.19□□□□□ -0.62
CUX1P39880 AL359092.1-201ENST00000417156 265 ntBASIC11.19□□□□□ -0.62
CUX1P39880 MTND2P12-201ENST00000417560 1252 ntBASIC11.19□□□□□ -0.62
CUX1P39880 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC11.19□□□□□ -0.62
CUX1P39880 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 CRYGGP-201ENST00000443337 145 ntBASIC11.19□□□□□ -0.62
CUX1P39880 RNA5SP418-201ENST00000515951 117 ntBASIC11.19□□□□□ -0.62
CUX1P39880 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC11.19□□□□□ -0.62
CUX1P39880 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 AL589863.1-201ENST00000595383 631 ntBASIC11.19□□□□□ -0.62
CUX1P39880 TEX41-218ENST00000596540 882 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 AL353763.2-201ENST00000623489 1903 ntBASIC11.19□□□□□ -0.62
CUX1P39880 ZNF846-202ENST00000586293 1621 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms