RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 DCAF8L2P0C7V8 631 aa16.52■□□□□ 0.24
COL4A6-201ENST00000334504 PELP1Q8IZL8 1130 aaKnown RBP16.03■□□□□ 0.16
COL4A6-201ENST00000334504 SUPT5HO00267 1087 aaKnown RBP15.65■□□□□ 0.1
COL4A6-201ENST00000334504 MYT1Q01538 1121 aa15.58■□□□□ 0.09
COL4A6-201ENST00000334504 ERICH6Q7L0X2 663 aa15.52■□□□□ 0.07
COL4A6-201ENST00000334504 EHMT2Q96KQ7 1210 aa15.45■□□□□ 0.06
COL4A6-201ENST00000334504 CENPBP07199 599 aaPredicted RBP15.31■□□□□ 0.04
COL4A6-201ENST00000334504 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
COL4A6-201ENST00000334504 PCGF6Q9BYE7 350 aa15.2■□□□□ 0.02
COL4A6-201ENST00000334504 SHROOM4Q9ULL8 1493 aa15.13■□□□□ 0.01
COL4A6-201ENST00000334504 APLP2Q06481 763 aa15.08■□□□□ 0
COL4A6-201ENST00000334504 TTBK1Q5TCY1 1321 aaPredicted RBP15.02□□□□□ -0.01
COL4A6-201ENST00000334504 ZEB1P37275 1124 aaPredicted RBP14.99□□□□□ -0.01
COL4A6-201ENST00000334504 YTHDC1Q96MU7 727 aaKnown RBP14.95□□□□□ -0.02
COL4A6-201ENST00000334504 NEFLP07196 543 aa14.92□□□□□ -0.02
COL4A6-201ENST00000334504 FAM9AQ8IZU1 332 aaPredicted RBP14.86□□□□□ -0.03
COL4A6-201ENST00000334504 RANGAP1P46060 587 aaPredicted RBP14.68□□□□□ -0.06
COL4A6-201ENST00000334504 DAXXQ9UER7 740 aaPredicted RBP14.6□□□□□ -0.07
COL4A6-201ENST00000334504 ATP1B4Q9UN42 357 aaPredicted RBP14.58□□□□□ -0.08
COL4A6-201ENST00000334504 NISCHQ9Y2I1 1504 aa14.57□□□□□ -0.08
COL4A6-201ENST00000334504 HRCP23327 699 aa14.47□□□□□ -0.09
COL4A6-201ENST00000334504 RTL5Q5HYW3 569 aaPredicted RBP14.41□□□□□ -0.1
COL4A6-201ENST00000334504 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
COL4A6-201ENST00000334504 PPARGC1BQ86YN6 1023 aaKnown RBP14.37□□□□□ -0.11
COL4A6-201ENST00000334504 CHIC1Q5VXU3 224 aa14.34□□□□□ -0.11
COL4A6-201ENST00000334504 TRIM26Q12899 539 aaPredicted RBP14.34□□□□□ -0.11
COL4A6-201ENST00000334504 MYT1LQ9UL68 1186 aa14.33□□□□□ -0.12
COL4A6-201ENST00000334504 UBTFP17480 764 aaKnown RBP14.3□□□□□ -0.12
COL4A6-201ENST00000334504 ZNF316A6NFI3 1004 aaPredicted RBP14.27□□□□□ -0.12
COL4A6-201ENST00000334504 POLR3GLQ9BT43 218 aa14.19□□□□□ -0.14
COL4A6-201ENST00000334504 CNGB1Q14028 1251 aaPredicted RBP14.13□□□□□ -0.15
COL4A6-201ENST00000334504 DIEXFQ68CQ4 756 aaKnown RBP14.12□□□□□ -0.15
COL4A6-201ENST00000334504 GTF3C3Q9Y5Q9 886 aa14.12□□□□□ -0.15
COL4A6-201ENST00000334504 CLSPNQ9HAW4 1339 aa14.1□□□□□ -0.15
COL4A6-201ENST00000334504 BCANQ96GW7 911 aa14.09□□□□□ -0.15
COL4A6-201ENST00000334504 ITGAEP38570 1179 aa14.05□□□□□ -0.16
COL4A6-201ENST00000334504 HNRNPUL2Q1KMD3 747 aaKnown RBP13.99□□□□□ -0.17
COL4A6-201ENST00000334504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.98□□□□□ -0.17
COL4A6-201ENST00000334504 CDK11AQ9UQ88 783 aaPredicted RBP13.97□□□□□ -0.17
COL4A6-201ENST00000334504 EIF5BO60841 1220 aaKnown RBP13.95□□□□□ -0.18
COL4A6-201ENST00000334504 SLC4A1APQ9BWU0 796 aaKnown RBP13.95□□□□□ -0.18
COL4A6-201ENST00000334504 LOC105371045A0A1W2PR82 267 aa13.92□□□□□ -0.18
COL4A6-201ENST00000334504 ACIN1Q9UKV3 1341 aaKnown RBP13.81□□□□□ -0.2
COL4A6-201ENST00000334504 GLIPR1L2Q4G1C9 344 aa13.8□□□□□ -0.2
COL4A6-201ENST00000334504 ANP32AP39687 249 aaKnown RBP13.76□□□□□ -0.21
COL4A6-201ENST00000334504 NPM2Q86SE8 214 aaKnown RBP13.71□□□□□ -0.21
COL4A6-201ENST00000334504 ANP32CO43423 234 aa13.71□□□□□ -0.22
COL4A6-201ENST00000334504 NEUROD1Q13562 356 aa13.65□□□□□ -0.22
COL4A6-201ENST00000334504 ZBTB47Q9UFB7 747 aaPredicted RBP13.65□□□□□ -0.22
COL4A6-201ENST00000334504 SLC24A1O60721 1099 aa13.65□□□□□ -0.22
COL4A6-201ENST00000334504 PLPPR3Q6T4P5 718 aa13.64□□□□□ -0.23
COL4A6-201ENST00000334504 BCL11AQ9H165 835 aa13.61□□□□□ -0.23
COL4A6-201ENST00000334504 ANP32BQ92688 251 aaKnown RBP13.61□□□□□ -0.23
COL4A6-201ENST00000334504 CANXP27824 592 aaKnown RBP13.59□□□□□ -0.23
COL4A6-201ENST00000334504 NBR1Q14596 966 aa13.58□□□□□ -0.24
COL4A6-201ENST00000334504 FAM50AQ14320 339 aaKnown RBP13.57□□□□□ -0.24
COL4A6-201ENST00000334504 FKBP8Q14318 412 aa13.56□□□□□ -0.24
COL4A6-201ENST00000334504 TRIM52Q96A61 297 aa13.54□□□□□ -0.24
COL4A6-201ENST00000334504 ZNF326Q5BKZ1 582 aaKnown RBP13.48□□□□□ -0.25
COL4A6-201ENST00000334504 ARXQ96QS3 562 aa13.46□□□□□ -0.25
COL4A6-201ENST00000334504 HSP90AA1P07900 732 aaKnown RBP13.44□□□□□ -0.26
COL4A6-201ENST00000334504 SCAF1Q9H7N4 1312 aaKnown RBP13.42□□□□□ -0.26
COL4A6-201ENST00000334504 FBLN2P98095 1184 aa13.39□□□□□ -0.27
COL4A6-201ENST00000334504 UPF2Q9HAU5 1272 aaKnown RBP13.36□□□□□ -0.27
COL4A6-201ENST00000334504 ANP32EQ9BTT0 268 aa13.32□□□□□ -0.28
COL4A6-201ENST00000334504 HNRNPUQ00839 825 aaKnown RBP eCLIP13.31□□□□□ -0.28
COL4A6-201ENST00000334504 NEFMP07197 916 aa13.28□□□□□ -0.28
COL4A6-201ENST00000334504 CCDC136Q96JN2 1154 aa13.28□□□□□ -0.28
COL4A6-201ENST00000334504 TNNT2P45379 298 aaPredicted RBP13.25□□□□□ -0.29
COL4A6-201ENST00000334504 A0A0G2JS52 829 aa13.24□□□□□ -0.29
COL4A6-201ENST00000334504 FAM9BQ8IZU0 186 aa13.24□□□□□ -0.29
COL4A6-201ENST00000334504 RTN4Q9NQC3 1192 aaKnown RBP13.23□□□□□ -0.29
COL4A6-201ENST00000334504 TRIM44Q96DX7 344 aaPredicted RBP13.21□□□□□ -0.29
COL4A6-201ENST00000334504 IRX6P78412 446 aaPredicted RBP13.21□□□□□ -0.29
COL4A6-201ENST00000334504 PABPN1Q86U42 306 aaKnown RBP eCLIP13.21□□□□□ -0.29
COL4A6-201ENST00000334504 ARID3CA6NKF2 412 aa13.2□□□□□ -0.3
COL4A6-201ENST00000334504 PLEKHG5O94827 1062 aa13.19□□□□□ -0.3
COL4A6-201ENST00000334504 SALL2Q9Y467 1007 aaPredicted RBP13.19□□□□□ -0.3
COL4A6-201ENST00000334504 DDX10Q13206 875 aaKnown RBP13.18□□□□□ -0.3
COL4A6-201ENST00000334504 NAP1L5Q96NT1 182 aaPredicted RBP13.17□□□□□ -0.3
COL4A6-201ENST00000334504 ABCC9O60706 1549 aa13.15□□□□□ -0.3
COL4A6-201ENST00000334504 DDRGK1Q96HY6 314 aa13.14□□□□□ -0.31
COL4A6-201ENST00000334504 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.13□□□□□ -0.31
COL4A6-201ENST00000334504 ERICH6BQ5W0A0 696 aa13.1□□□□□ -0.31
COL4A6-201ENST00000334504 MIER1Q8N108 512 aa13.1□□□□□ -0.31
COL4A6-201ENST00000334504 ESF1Q9H501 851 aaKnown RBP13.1□□□□□ -0.31
COL4A6-201ENST00000334504 BECN1Q14457 450 aa13.08□□□□□ -0.32
COL4A6-201ENST00000334504 CDK11BP21127 795 aaKnown RBP13.08□□□□□ -0.32
COL4A6-201ENST00000334504 SENP3Q9H4L4 574 aaPredicted RBP13.07□□□□□ -0.32
COL4A6-201ENST00000334504 DNTTIP2Q5QJE6 756 aaKnown RBP13.06□□□□□ -0.32
COL4A6-201ENST00000334504 TONSLQ96HA7 1378 aa13.06□□□□□ -0.32
COL4A6-201ENST00000334504 PTMAP06454 111 aaKnown RBP13.06□□□□□ -0.32
COL4A6-201ENST00000334504 NCLP19338 710 aaKnown RBP13.04□□□□□ -0.32
COL4A6-201ENST00000334504 TMC1Q8TDI8 760 aa13.04□□□□□ -0.32
COL4A6-201ENST00000334504 AMER1Q5JTC6 1135 aaPredicted RBP13.03□□□□□ -0.32
COL4A6-201ENST00000334504 LAS1LQ9Y4W2 734 aaKnown RBP13.03□□□□□ -0.32
COL4A6-201ENST00000334504 STAG3Q9UJ98 1225 aa13.02□□□□□ -0.32
COL4A6-201ENST00000334504 PPM1GO15355 546 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-201ENST00000334504 GOLGA6L22H0YM25 854 aa13.02□□□□□ -0.33
COL4A6-201ENST00000334504 MRS2Q9HD23 443 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms