RNA–Protein interactions for RNA: ENST00000610288.4

COL25A1-208, Transcript of collagen type XXV alpha 1 chain, humanhuman

TSL 5 BASIC

Gene COL25A1, Length 4,799 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1-208ENST00000610288 DCAF8L2P0C7V8 631 aa15.64■□□□□ 0.09
COL25A1-208ENST00000610288 PELP1Q8IZL8 1130 aaKnown RBP15.17■□□□□ 0.02
COL25A1-208ENST00000610288 MYT1Q01538 1121 aa15.16■□□□□ 0.02
COL25A1-208ENST00000610288 NISCHQ9Y2I1 1504 aa15□□□□□ -0.01
COL25A1-208ENST00000610288 SUPT5HO00267 1087 aaKnown RBP14.86□□□□□ -0.03
COL25A1-208ENST00000610288 SHROOM4Q9ULL8 1493 aa14.58□□□□□ -0.07
COL25A1-208ENST00000610288 EHMT2Q96KQ7 1210 aa14.33□□□□□ -0.11
COL25A1-208ENST00000610288 PCGF6Q9BYE7 350 aa14.33□□□□□ -0.11
COL25A1-208ENST00000610288 ZEB1P37275 1124 aaPredicted RBP14.22□□□□□ -0.13
COL25A1-208ENST00000610288 CENPBP07199 599 aaPredicted RBP14.15□□□□□ -0.14
COL25A1-208ENST00000610288 HRCP23327 699 aa14.05□□□□□ -0.16
COL25A1-208ENST00000610288 APLP2Q06481 763 aa14.03□□□□□ -0.16
COL25A1-208ENST00000610288 FAM9AQ8IZU1 332 aaPredicted RBP14.01□□□□□ -0.17
COL25A1-208ENST00000610288 TTBK1Q5TCY1 1321 aaPredicted RBP13.99□□□□□ -0.17
COL25A1-208ENST00000610288 ERICH6Q7L0X2 663 aa13.91□□□□□ -0.18
COL25A1-208ENST00000610288 CCER1Q8TC90 406 aaPredicted RBP13.85□□□□□ -0.19
COL25A1-208ENST00000610288 TRIM26Q12899 539 aaPredicted RBP13.8□□□□□ -0.2
COL25A1-208ENST00000610288 TRIM41Q8WV44 630 aa13.75□□□□□ -0.21
COL25A1-208ENST00000610288 RANGAP1P46060 587 aaPredicted RBP13.69□□□□□ -0.22
COL25A1-208ENST00000610288 YTHDC1Q96MU7 727 aaKnown RBP13.6□□□□□ -0.23
COL25A1-208ENST00000610288 PPARGC1BQ86YN6 1023 aaKnown RBP13.6□□□□□ -0.23
COL25A1-208ENST00000610288 CHIC1Q5VXU3 224 aa13.58□□□□□ -0.24
COL25A1-208ENST00000610288 NEFLP07196 543 aa13.57□□□□□ -0.24
COL25A1-208ENST00000610288 UBTFP17480 764 aaKnown RBP13.56□□□□□ -0.24
COL25A1-208ENST00000610288 ATP1B4Q9UN42 357 aaPredicted RBP13.54□□□□□ -0.24
COL25A1-208ENST00000610288 LOC105371045A0A1W2PR82 267 aa13.43□□□□□ -0.26
COL25A1-208ENST00000610288 DIEXFQ68CQ4 756 aaKnown RBP13.35□□□□□ -0.27
COL25A1-208ENST00000610288 GTF3C3Q9Y5Q9 886 aa13.28□□□□□ -0.28
COL25A1-208ENST00000610288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.21□□□□□ -0.29
COL25A1-208ENST00000610288 ACIN1Q9UKV3 1341 aaKnown RBP13.21□□□□□ -0.29
COL25A1-208ENST00000610288 ITGAEP38570 1179 aa13.14□□□□□ -0.31
COL25A1-208ENST00000610288 ABCC9O60706 1549 aa13.14□□□□□ -0.31
COL25A1-208ENST00000610288 RTL5Q5HYW3 569 aaPredicted RBP13.13□□□□□ -0.31
COL25A1-208ENST00000610288 PABPN1Q86U42 306 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL25A1-208ENST00000610288 HNRNPUL2Q1KMD3 747 aaKnown RBP13.11□□□□□ -0.31
COL25A1-208ENST00000610288 MYT1LQ9UL68 1186 aa13.04□□□□□ -0.32
COL25A1-208ENST00000610288 ZNF316A6NFI3 1004 aaPredicted RBP13.03□□□□□ -0.32
COL25A1-208ENST00000610288 DCAF1Q9Y4B6 1507 aa13.03□□□□□ -0.32
COL25A1-208ENST00000610288 DAXXQ9UER7 740 aaPredicted RBP13.01□□□□□ -0.33
COL25A1-208ENST00000610288 POLR3GLQ9BT43 218 aa12.99□□□□□ -0.33
COL25A1-208ENST00000610288 CLSPNQ9HAW4 1339 aa12.98□□□□□ -0.33
COL25A1-208ENST00000610288 GLIPR1L2Q4G1C9 344 aa12.96□□□□□ -0.34
COL25A1-208ENST00000610288 SCAF1Q9H7N4 1312 aaKnown RBP12.95□□□□□ -0.34
COL25A1-208ENST00000610288 NEUROD1Q13562 356 aa12.88□□□□□ -0.35
COL25A1-208ENST00000610288 CNGB1Q14028 1251 aaPredicted RBP12.88□□□□□ -0.35
COL25A1-208ENST00000610288 BCANQ96GW7 911 aa12.88□□□□□ -0.35
COL25A1-208ENST00000610288 CDK11AQ9UQ88 783 aaPredicted RBP12.86□□□□□ -0.35
COL25A1-208ENST00000610288 BCL11AQ9H165 835 aa12.86□□□□□ -0.35
COL25A1-208ENST00000610288 EIF5BO60841 1220 aaKnown RBP12.81□□□□□ -0.36
COL25A1-208ENST00000610288 FAM50AQ14320 339 aaKnown RBP12.8□□□□□ -0.36
COL25A1-208ENST00000610288 ANP32EQ9BTT0 268 aa12.79□□□□□ -0.36
COL25A1-208ENST00000610288 ANP32CO43423 234 aa12.79□□□□□ -0.36
COL25A1-208ENST00000610288 FBLN2P98095 1184 aa12.77□□□□□ -0.37
COL25A1-208ENST00000610288 TRIM52Q96A61 297 aa12.71□□□□□ -0.37
COL25A1-208ENST00000610288 SLC4A1APQ9BWU0 796 aaKnown RBP12.69□□□□□ -0.38
COL25A1-208ENST00000610288 FKBP8Q14318 412 aa12.65□□□□□ -0.38
COL25A1-208ENST00000610288 ANP32AP39687 249 aaKnown RBP12.64□□□□□ -0.39
COL25A1-208ENST00000610288 MYO15BQ96JP2 1530 aa12.63□□□□□ -0.39
COL25A1-208ENST00000610288 CCDC180Q9P1Z9 1646 aa12.63□□□□□ -0.39
COL25A1-208ENST00000610288 CSRNP3Q8WYN3 585 aa12.6□□□□□ -0.39
COL25A1-208ENST00000610288 MIER1Q8N108 512 aa12.58□□□□□ -0.4
COL25A1-208ENST00000610288 ZNF326Q5BKZ1 582 aaKnown RBP12.57□□□□□ -0.4
COL25A1-208ENST00000610288 ZCCHC6Q5VYS8 1495 aaKnown RBP12.53□□□□□ -0.4
COL25A1-208ENST00000610288 P3H3Q8IVL6 736 aa12.52□□□□□ -0.41
COL25A1-208ENST00000610288 ARID3CA6NKF2 412 aa12.45□□□□□ -0.42
COL25A1-208ENST00000610288 HNRNPUQ00839 825 aaKnown RBP eCLIP12.45□□□□□ -0.42
COL25A1-208ENST00000610288 DDX10Q13206 875 aaKnown RBP12.45□□□□□ -0.42
COL25A1-208ENST00000610288 NPM2Q86SE8 214 aaKnown RBP12.41□□□□□ -0.42
COL25A1-208ENST00000610288 ZBTB47Q9UFB7 747 aaPredicted RBP12.41□□□□□ -0.42
COL25A1-208ENST00000610288 TONSLQ96HA7 1378 aa12.38□□□□□ -0.43
COL25A1-208ENST00000610288 NBR1Q14596 966 aa12.38□□□□□ -0.43
COL25A1-208ENST00000610288 ZNF777Q9ULD5 760 aaPredicted RBP12.37□□□□□ -0.43
COL25A1-208ENST00000610288 SCRIBQ14160 1630 aa12.36□□□□□ -0.43
COL25A1-208ENST00000610288 CCDC136Q96JN2 1154 aa12.34□□□□□ -0.43
COL25A1-208ENST00000610288 SUPT16HQ9Y5B9 1047 aaKnown RBP12.33□□□□□ -0.44
COL25A1-208ENST00000610288 NPM1P06748 294 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL25A1-208ENST00000610288 PLPPR3Q6T4P5 718 aa12.31□□□□□ -0.44
COL25A1-208ENST00000610288 PRKCSHP14314 528 aaPredicted RBP12.31□□□□□ -0.44
COL25A1-208ENST00000610288 CANXP27824 592 aaKnown RBP12.31□□□□□ -0.44
COL25A1-208ENST00000610288 FAM9BQ8IZU0 186 aa12.3□□□□□ -0.44
COL25A1-208ENST00000610288 ERICH6BQ5W0A0 696 aa12.27□□□□□ -0.45
COL25A1-208ENST00000610288 ESF1Q9H501 851 aaKnown RBP12.27□□□□□ -0.45
COL25A1-208ENST00000610288 NEFMP07197 916 aa12.26□□□□□ -0.45
COL25A1-208ENST00000610288 CEP162Q5TB80 1403 aa12.26□□□□□ -0.45
COL25A1-208ENST00000610288 EEA1Q15075 1411 aa12.25□□□□□ -0.45
COL25A1-208ENST00000610288 ANP32BQ92688 251 aaKnown RBP12.25□□□□□ -0.45
COL25A1-208ENST00000610288 CLIP1P30622 1438 aa12.24□□□□□ -0.45
COL25A1-208ENST00000610288 IRX6P78412 446 aaPredicted RBP12.23□□□□□ -0.45
COL25A1-208ENST00000610288 MRS2Q9HD23 443 aa12.23□□□□□ -0.45
COL25A1-208ENST00000610288 TNNT2P45379 298 aaPredicted RBP12.23□□□□□ -0.45
COL25A1-208ENST00000610288 DEKP35659 375 aaKnown RBP12.23□□□□□ -0.45
COL25A1-208ENST00000610288 SLC24A1O60721 1099 aa12.23□□□□□ -0.45
COL25A1-208ENST00000610288 UPF2Q9HAU5 1272 aaKnown RBP12.22□□□□□ -0.45
COL25A1-208ENST00000610288 TNIKQ9UKE5 1360 aa12.19□□□□□ -0.46
COL25A1-208ENST00000610288 CHIC2Q9UKJ5 165 aa12.19□□□□□ -0.46
COL25A1-208ENST00000610288 DDRGK1Q96HY6 314 aa12.18□□□□□ -0.46
COL25A1-208ENST00000610288 TMC1Q8TDI8 760 aa12.18□□□□□ -0.46
COL25A1-208ENST00000610288 GOLGA3Q08378 1498 aa12.18□□□□□ -0.46
COL25A1-208ENST00000610288 PPP4R2Q9NY27 417 aa12.17□□□□□ -0.46
COL25A1-208ENST00000610288 RTN4Q9NQC3 1192 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms